From 1214e3622890a97d506c90be9d7650f0ab6b5357 Mon Sep 17 00:00:00 2001 From: "@Aveglia" Date: Fri, 22 Oct 2021 18:51:54 -0500 Subject: [PATCH] fixed pcASV channels for skipping --- vAMPirus.nf | 24 ++++++++++++++++++------ 1 file changed, 18 insertions(+), 6 deletions(-) diff --git a/vAMPirus.nf b/vAMPirus.nf index ed9a978..b01ed63 100644 --- a/vAMPirus.nf +++ b/vAMPirus.nf @@ -1864,11 +1864,15 @@ if (params.DataCheck || params.Analyze) { tuple nid, file(asvs) from nuclFastas_forDiamond_ncasv_ch output: - tuple nid, file("skipncASVtaxonomy.txt") into ( taxplot_ncasv, tax_table_ncasv, tax_nodCol_ncasv ) + tuple nid, file("skipncASVtaxonomy1.txt") into ( taxplot_ncasv ) + tuple nid, file("skipncASVtaxonomy2.txt") into ( tax_table_ncasv ) + tuple nid, file("skipncASVtaxonomy3.txt") into ( tax_nodCol_ncasv ) script: """ - echo "Skipped" >skipncASVtaxonomy.txt + echo "Skipped" >skipncASVtaxonomy1.txt + echo "Skipped" >skipncASVtaxonomy2.txt + echo "Skipped" >skipncASVtaxonomy3.txt """ } } @@ -3789,11 +3793,15 @@ if (params.DataCheck || params.Analyze) { tuple nid, file(asvs) from pcASV_ntDiamond_ch output: - tuple nid, file("skipncASVnubtaxonomy.txt") into ( taxplot3, tax_table_pcasvnt, tax_nodCol_pcasvnt ) + tuple nid, file("skipncASVnubtaxonomy1.txt") into ( taxplot3 ) + tuple nid, file("skipncASVnubtaxonomy2.txt") into ( tax_table_pcasvnt ) + tuple nid, file("skipncASVnubtaxonomy3.txt") into ( tax_nodCol_pcasvnt ) script: """ - echo "Skipped" >skipncASVnubtaxonomy.txt + echo "Skipped" >skipncASVnubtaxonomy1.txt + echo "Skipped" >skipncASVnubtaxonomy2.txt + echo "Skipped" >skipncASVnubtaxonomy3.txt """ } } @@ -4303,11 +4311,15 @@ if (params.DataCheck || params.Analyze) { tuple nid, file(asvs) from pcASV_aaDiamond_ch output: - tuple nid, file("skipncASVprottax.txt") into ( taxplot4, tax_table_pcasvaa, tax_nodCol_pcasvaa ) + tuple nid, file("skipncASVprottax1.txt") into taxplot4 + tuple nid, file("skipncASVprottax2.txt") into tax_table_pcasvaa + tuple nid, file("skipncASVprottax3.txt") into tax_nodCol_pcasvaa script: """ - echo "Skipped" >skipncASVprottax.txt + echo "Skipped" >skipncASVprottax1.txt + echo "Skipped" >skipncASVprottax2.txt + echo "Skipped" >skipncASVprottax3.txt """ } }