From 8c1ee8978473ee5e5410ca0d87a18d4e2413733f Mon Sep 17 00:00:00 2001 From: "@Aveglia" Date: Thu, 18 Aug 2022 14:38:09 -0500 Subject: [PATCH] added yaml directory --- bin/yamls/phylogeny_med.yml | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 bin/yamls/phylogeny_med.yml diff --git a/bin/yamls/phylogeny_med.yml b/bin/yamls/phylogeny_med.yml new file mode 100644 index 0000000..31448fb --- /dev/null +++ b/bin/yamls/phylogeny_med.yml @@ -0,0 +1,18 @@ +# You can use this file to create a conda environment for this pipeline: +# conda env create -f env.yml +name: vAMPirus_phy_med +channels: + - conda-forge + - bioconda + - anaconda + - defaults + - genomedk +dependencies: + - python=3.6 + - trimal=1.4.1 + - iqtree=2.0.3 + - modeltest-ng=0.1.6 + - pip + - pip: + - oligotyping + - treecluster