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When running the script file "install.sh" several warnings are showed related to different part of code in iSkyLIMS
` /opt/iskylims/wetlab/utils/library.py:807: SyntaxWarning: invalid escape sequence '\d' split_code = re.search("(.*_)(\d+)$", last_lib_prep_code_id)
/opt/iskylims/wetlab/utils/common.py:189: SyntaxWarning: invalid escape sequence '\s' found_tag = re.search("^\s+ %s" % search_line, line)
/opt/iskylims/wetlab/utils/samplesheet.py:109: SyntaxWarning: invalid escape sequence '[' data_found = re.search("^[Data]", line)
/opt/iskylims/wetlab/utils/samplesheet.py:208: SyntaxWarning: invalid escape sequence '\w' if read_found and re.search("^\w+", line):
/opt/iskylims/wetlab/utils/samplesheet.py:395: SyntaxWarning: invalid escape sequence '\w' valid_line = re.search("^\w+", line)
/opt/iskylims/wetlab/utils/samplesheet.py:445: SyntaxWarning: invalid escape sequence '\d' tmp = re.search("(.)\d{8}-\d+..csv", library_file_name)
/opt/iskylims/wetlab/utils/samplesheet.py:520: SyntaxWarning: invalid escape sequence '\W' if line == "\n" or re.search("^\W", line):
/opt/iskylims/wetlab/utils/samplesheet.py:595: SyntaxWarning: invalid escape sequence '\W' if line == "\n" or re.search("^\W", line):
/opt/iskylims/wetlab/utils/collection_index.py:76: SyntaxWarning: invalid escape sequence '[' found_collection_name = re.search("^[Name]", line)
/opt/iskylims/wetlab/utils/collection_index.py:308: SyntaxWarning: invalid escape sequence '.' split_filename = re.search("(.*)(.\w+$)", collection_file.name)
/opt/iskylims/wetlab/utils/crontab_process.py:723: SyntaxWarning: invalid escape sequence '\d' log_file = re.search(".Cycle(\d+).", file_remote) `
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The text was updated successfully, but these errors were encountered:
Solved issue BU-ISCIII#312 warnings when running the install.sh
05e95d2
added "r" parameter on the re.search
Sorry, something went wrong.
luissian
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Description of the bug
When running the script file "install.sh" several warnings are showed related to different part of code in iSkyLIMS
`
/opt/iskylims/wetlab/utils/library.py:807: SyntaxWarning: invalid escape sequence '\d'
split_code = re.search("(.*_)(\d+)$", last_lib_prep_code_id)
/opt/iskylims/wetlab/utils/common.py:189: SyntaxWarning: invalid escape sequence '\s'
found_tag = re.search("^\s+ %s" % search_line, line)
/opt/iskylims/wetlab/utils/samplesheet.py:109: SyntaxWarning: invalid escape sequence '['
data_found = re.search("^[Data]", line)
/opt/iskylims/wetlab/utils/samplesheet.py:208: SyntaxWarning: invalid escape sequence '\w'
if read_found and re.search("^\w+", line):
/opt/iskylims/wetlab/utils/samplesheet.py:395: SyntaxWarning: invalid escape sequence '\w'
valid_line = re.search("^\w+", line)
/opt/iskylims/wetlab/utils/samplesheet.py:445: SyntaxWarning: invalid escape sequence '\d'
tmp = re.search("(.)\d{8}-\d+..csv", library_file_name)
/opt/iskylims/wetlab/utils/samplesheet.py:520: SyntaxWarning: invalid escape sequence '\W'
if line == "\n" or re.search("^\W", line):
/opt/iskylims/wetlab/utils/samplesheet.py:595: SyntaxWarning: invalid escape sequence '\W'
if line == "\n" or re.search("^\W", line):
/opt/iskylims/wetlab/utils/collection_index.py:76: SyntaxWarning: invalid escape sequence '['
found_collection_name = re.search("^[Name]", line)
/opt/iskylims/wetlab/utils/collection_index.py:308: SyntaxWarning: invalid escape sequence '.'
split_filename = re.search("(.*)(.\w+$)", collection_file.name)
/opt/iskylims/wetlab/utils/crontab_process.py:723: SyntaxWarning: invalid escape sequence '\d'
log_file = re.search(".Cycle(\d+).", file_remote)
`
Command used and terminal output
No response
Relevant files
No response
System information
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The text was updated successfully, but these errors were encountered: