From 5632787abc7d60a4955869aeaf76eb5b147479cf Mon Sep 17 00:00:00 2001
From: espelpz <esperanzalpz96@gmail.com>
Date: Tue, 13 Jul 2021 11:11:27 +0200
Subject: [PATCH] distance matrix command fixed

---
 README.md | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index bfe9399..23ca67f 100644
--- a/README.md
+++ b/README.md
@@ -126,18 +126,17 @@ taranis allele_calling \
 
 ```
 taranis distance_matrix \
--alleles_matrix YYYY-MM-DD_taranis_allele_calling_dir/result.tsv
+-alleles_matrix YYYY-MM-DD_taranis_allele_calling_dir/result.tsv -outputdir YYYY-MM-DD_taranis_distance_matrix_dir
 ```
 
   <p>Get distance matrix filtering loci and samples which missing values percentage is above specified threshold:
 
 ```
 taranis distance_matrix\
--alleles_matrix \
+-alleles_matrix YYYY-MM-DD_taranis_allele_calling_dir/result.tsv\
 -locus_missing_threshold 20 \
 -sample_missing_threshold 50 \
--refgenome reference_genome_dir \
--outputdir YYYY-MM-DD_taranis_allele_calling_dir
+-outputdir YYYY-MM-DD_taranis_distance_matrix_dir
 ```