Issues Encountered During Feature Generation

[hkhkhove]

Hi,

I've encountered a couple of issues while generating features:

It seems that the batch_save_msa_feat.py script is not compatible with the latest ColabFold 1.5.5. Could you please specify which version of ColabFold your batch_save_msa_feat.py script is compatible with?

It appears that there is no script in the repository to generate the distmap.

To address these issues, I modified the ColabFold 1.5.5 batch.py script to extract the MSA first row features, and I wrote a script to extract the distmap based on the provided distmap example. However, the AUC obtained with my modified code on the DNA_test_129 dataset is 0.9386, which is lower than the 0.9428 AUC obtained with your provided features. I suspect there might be an issue with my modifications.

Could you please provide some guidance on these issues?

Thank you!