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environment.yaml
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environment.yaml
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name: indrops
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bcftools=1.8=h4da6232_3
- bioconductor-biobase=2.42.0=r351h14c3975_1
- bioconductor-biocgenerics=0.28.0=r351_1
- bioconductor-ebseq=1.24.0=r351_0
- bowtie=1.1.1=py27h2d50403_0
- fastqc=0.11.9=0
- htslib=1.9=h4da6232_3
- perl-app-cpanminus=1.7044=pl526_1
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-cpan-meta=2.150010=pl526_0
- perl-cpan-meta-requirements=2.140=pl526_0
- perl-cpan-meta-yaml=0.018=pl526_0
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-cbuilder=0.280230=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-extutils-manifest=1.72=pl526_0
- perl-extutils-parsexs=3.35=pl526_0
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-getopt-long=2.50=pl526_1
- perl-ipc-cmd=1.02=pl526_0
- perl-json-pp=4.04=pl526_0
- perl-locale-maketext-simple=0.21=pl526_2
- perl-module-build=0.4224=pl526_3
- perl-module-corelist=5.20190524=pl526_0
- perl-module-load=0.32=pl526_1
- perl-module-load-conditional=0.68=pl526_2
- perl-module-metadata=1.000036=pl526_0
- perl-params-check=0.38=pl526_1
- perl-parent=0.236=pl526_1
- perl-perl-ostype=1.010=pl526_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-text-abbrev=1.02=pl526_0
- perl-text-parsewords=3.30=pl526_0
- perl-version=0.9924=pl526_0
- pyfasta=0.5.2=py27_0
- pysam=0.15.3=py27hbcae180_3
- rsem=1.3.2=pl526ha52163a_1
- samtools=1.3.1=5
- star=2.7.3a=0
- ucsc-bigwigsummary=377=h199ee4e_0
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.1.5=h516909a_1002
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- backports_abc=0.5=py_1
- binutils_impl_linux-64=2.33.1=he1b5a44_7
- binutils_linux-64=2.33.1=h9595d00_15
- boost=1.67.0=py27h3e44d54_0
- boost-cpp=1.67.0=h3a22d5f_0
- bwidget=1.9.13=0
- bzip2=1.0.8=h516909a_1
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.14.12=h80bd089_1005
- certifi=2019.11.28=py27_0
- curl=7.64.0=h646f8bb_0
- cycler=0.10.0=py_2
- enum34=1.1.6=py27_1002
- expat=2.2.5=he1b5a44_1004
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_1
- functools32=3.2.3.2=py_3
- futures=3.3.0=py27_0
- gcc_impl_linux-64=7.3.0=habb00fd_2
- gcc_linux-64=7.3.0=h553295d_15
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_2
- gfortran_linux-64=7.3.0=h553295d_15
- giflib=5.2.1=h516909a_1
- glib=2.56.2=had28632_1001
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.5=h294904e_1
- gxx_impl_linux-64=7.3.0=hdf63c60_2
- gxx_linux-64=7.3.0=h553295d_15
- icu=58.2=hf484d3e_1000
- jpeg=9c=h14c3975_1001
- kiwisolver=1.1.0=py27hc9558a2_0
- krb5=1.16.3=hc83ff2d_1000
- lcms2=2.9=hbd6801e_1
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libclang=9.0.0=default_hde54327_4
- libcurl=7.64.0=h01ee5af_0
- libdeflate=1.3=h516909a_0
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgfortran=3.0.0=1
- libgfortran-ng=7.3.0=hdf63c60_2
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- libllvm9=9.0.0=hc9558a2_3
- libopenblas=0.3.7=h6e990d7_3
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.0=h1ad7b7a_1003
- libtiff=4.1.0=hc3755c2_1
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxkbcommon=0.9.1=hebb1f50_0
- libxml2=2.9.9=h13577e0_2
- lz4-c=1.8.3=he1b5a44_1001
- make=4.2.1=h14c3975_2004
- matplotlib=2.2.3=py27h8a2030e_1
- matplotlib-base=2.2.3=py27h60b886d_1
- mysql-connector-c=6.1.11=hab6429c_1002
- ncurses=6.1=hf484d3e_1002
- nspr=4.23=he1b5a44_0
- nss=3.47=he751ad9_0
- numpy=1.16.5=py27h95a1406_0
- openjdk=11.0.1=h600c080_1018
- openssl=1.0.2u=h516909a_0
- pango=1.40.14=he752989_2
- pcre=8.43=he1b5a44_0
- perl=5.26.2=h516909a_1006
- pip=19.3.1=py27_0
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- pyparsing=2.4.5=py_0
- pyqt=5.6.0=py27h13b7fb3_1008
- python=2.7.15=h938d71a_1006
- python-dateutil=2.8.1=py_0
- pytz=2019.3=py_0
- pyyaml=5.1.2=py27h516909a_0
- r=3.5.1=r35_1003
- r-assertthat=0.2.1=r35h6115d3f_1
- r-backports=1.1.5=r35hcdcec82_0
- r-base=3.5.1=he45234b_1005
- r-bibtex=0.4.2=r35hcdcec82_1003
- r-bitops=1.0_6=r35hcdcec82_1003
- r-blockmodeling=0.3.4=r35h9bbef5b_2
- r-boot=1.3_23=r35h6115d3f_2
- r-callr=3.3.2=r35h6115d3f_0
- r-catools=1.17.1.2=r35h0357c0b_1
- r-class=7.3_15=r35hcdcec82_1001
- r-cli=1.1.0=r35h6115d3f_2
- r-cluster=2.1.0=r35h9bbef5b_2
- r-codetools=0.2_16=r35h6115d3f_1001
- r-crayon=1.3.4=r35h6115d3f_1002
- r-desc=1.2.0=r35h6115d3f_1002
- r-digest=0.6.23=r35h0357c0b_0
- r-doparallel=1.0.15=r35h6115d3f_0
- r-dorng=1.7.1=r35h6115d3f_1001
- r-ellipsis=0.3.0=r35hcdcec82_0
- r-evaluate=0.14=r35h6115d3f_1
- r-foreach=1.4.7=r35h6115d3f_0
- r-foreign=0.8_72=r35hcdcec82_0
- r-gdata=2.18.0=r35h6115d3f_1002
- r-glue=1.3.1=r35hcdcec82_1
- r-gplots=3.0.1.1=r35h6115d3f_1
- r-gtools=3.8.1=r35hcdcec82_1003
- r-iterators=1.0.12=r35h6115d3f_0
- r-kernsmooth=2.23_15=r35h9bbef5b_1004
- r-lattice=0.20_38=r35hcdcec82_1002
- r-magrittr=1.5=r35h6115d3f_1002
- r-mass=7.3_51.4=r35hcdcec82_1
- r-matrix=1.2_17=r35hcdcec82_1
- r-mgcv=1.8_29=r35hcdcec82_0
- r-nlme=3.1_141=r35h9bbef5b_1
- r-nnet=7.3_12=r35hcdcec82_1003
- r-pkgbuild=1.0.6=r35h6115d3f_0
- r-pkgload=1.0.2=r35h0357c0b_1001
- r-pkgmaker=0.27=r35h6115d3f_1001
- r-praise=1.0.0=r35h6115d3f_1003
- r-prettyunits=1.0.2=r35h6115d3f_1002
- r-processx=3.4.1=r35hcdcec82_0
- r-ps=1.3.0=r35hcdcec82_1001
- r-r6=2.4.1=r35h6115d3f_0
- r-recommended=3.5.1=r35_1003
- r-registry=0.5_1=r35h6115d3f_1
- r-rlang=0.4.2=r35hcdcec82_0
- r-rngtools=1.4=r35h6115d3f_1
- r-rpart=4.1_15=r35hcdcec82_1
- r-rprojroot=1.3_2=r35h6115d3f_1002
- r-rstudioapi=0.10=r35h6115d3f_2
- r-spatial=7.3_11=r35hcdcec82_1003
- r-stringi=1.4.3=r35h0357c0b_2
- r-stringr=1.4.0=r35h6115d3f_1
- r-survival=2.44_1.1=r35hcdcec82_1
- r-testthat=2.3.0=r35h0357c0b_0
- r-withr=2.1.2=r35h6115d3f_1001
- r-xtable=1.8_4=r35h6115d3f_2
- readline=7.0=hf8c457e_1001
- scipy=1.2.1=py27h921218d_2
- setuptools=41.6.0=py27_1
- singledispatch=3.4.0.3=py27_1000
- sip=4.18.1=py27hf484d3e_1000
- six=1.13.0=py27_0
- subprocess32=3.5.4=py27h516909a_0
- tbb=2019.9=hc9558a2_0
- tk=8.6.9=hed695b0_1003
- tktable=2.10=h555a92e_3
- tornado=5.1.1=py27h14c3975_1000
- wheel=0.33.6=py27_0
- xorg-fixesproto=5.0=h14c3975_1002
- xorg-inputproto=2.3.2=h14c3975_1002
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxfixes=5.0.3=h516909a_1004
- xorg-libxi=1.7.10=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.2.0=h516909a_0
- xorg-libxtst=1.2.3=h516909a_1002
- xorg-recordproto=1.14.2=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.1.7=h14c3975_1001
- zlib=1.2.11=h516909a_1006
- zstd=1.4.4=h3b9ef0a_1
- _libgcc_mutex=0.1=main
- dbus=1.13.2=h714fa37_1
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- harfbuzz=1.8.8=hffaf4a1_0
- libedit=3.1.20181209=hc058e9b_0
- libgcc-ng=9.1.0=hdf63c60_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- qt=5.6.3=h8bf5577_3
- sqlite=3.30.1=h7b6447c_0
prefix: /projectnb/bradham/dyh0110/.conda/envs/indrops