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environment.yaml
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environment.yaml
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name: ErnieFold
channels:
- http://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch
- http://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
- http://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch/
- http://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- ca-certificates=2024.3.11=h06a4308_0
- cudatoolkit=11.8.0=h6a678d5_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py38h5eee18b_1
- mkl_fft=1.3.8=py38h5eee18b_0
- mkl_random=1.2.4=py38hdb19cb5_0
- ncurses=6.4=h6a678d5_0
- numpy=1.24.3=py38hf6e8229_1
- numpy-base=1.24.3=py38h060ed82_1
- openssl=3.0.13=h7f8727e_1
- pip=24.0=py38h06a4308_0
- python=3.8.19=h955ad1f_0
- pytorch-mutex=1.0=cpu
- readline=8.2=h5eee18b_0
- setuptools=69.5.1=py38h06a4308_0
- sqlite=3.45.3=h5eee18b_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.14=h39e8969_0
- typing_extensions=4.11.0=py38h06a4308_0
- wheel=0.43.0=py38h06a4308_0
- xz=5.4.6=h5eee18b_1
- zlib=1.2.13=h5eee18b_1
- pip:
- aiohttp==3.9.5
- aiosignal==1.3.1
- async-timeout==4.0.3
- attrdict==2.0.1
- attrs==23.2.0
- biopython==1.83
- certifi==2024.2.2
- charset-normalizer==3.3.2
- cmake==3.25.0
- filelock==3.14.0
- frozenlist==1.4.1
- fsspec==2024.5.0
- huggingface-hub==0.23.0
- idna==3.7
- importlib-metadata==7.1.0
- jinja2==3.1.3
- jmespath==1.0.1
- joblib==1.4.2
- lightning-utilities==0.11.2
- lit==15.0.7
- llvmlite==0.41.1
- lmdb==1.4.1
- markupsafe==2.1.5
- mpmath==1.3.0
- multidict==6.0.5
- networkx==3.0
- numba==0.58.1
- packaging==24.0
- pandas==2.0.3
- pillow==10.2.0
- protobuf==5.26.1
- ptflops==0.7.3
- python-dateutil==2.9.0.post0
- pytorch-lightning==2.2.4
- pytz==2024.1
- pyyaml==6.0.1
- regex==2024.5.15
- requests==2.32.1
- safetensors==0.4.3
- scikit-learn==1.3.2
- scipy==1.10.1
- six==1.16.0
- sympy==1.12
- tape-proteins==0.5
- tensorboardx==2.6.2.2
- threadpoolctl==3.5.0
- tokenizers==0.19.1
- torchmetrics==1.4.0.post0
- torchvision==0.15.2+cu118
- tqdm==4.66.4
- transformers==4.41.0
- triton==2.0.0
- tzdata==2024.1
- urllib3==1.26.18
- yarl==1.9.4
- zipp==3.18.2
prefix: /home/wangning/miniconda3/envs/ErnieFold