2. sarek_results.py -> html

[Cleiti]

• GC bias (see DATA_OUT: GC bias plot (picard -> all plex on one plot) #15) (obs: reference genome!)

• dups: in text

• run_sarek/multiqc/multiqc_plots/png/mqc_fastp-insert-size-plot_1.png

• run_sarek/multiqc/multiqc_plots/png/ -> mqc_mosdepth-cumcoverage-dist-id_1.png

• genotype concordance (from VCF, how?)

• text stats from multiqc_html (see Text stats from multiQC html -> into html #25 )

• compare current desktop html code and make code in sarek_results.py produce the same

(all types of sarek can do can be seen at nf-co.re/sarek/3.2.3/results/sarek/results-ed1cc8499366dcefea216fe37e36c6189537d57b/germline_test/ )

[Cleiti]

UPD: trying to create python making html in sarek_results.py.

asked dad

[Cleiti]

UPD: options are

1. put png's in a html, then must use the .html and it's data (png) folder together (can't find files otherwise)
2. create graphs in javascript inside html-file using raw data. But fucking how?

To do: make option 1, ask Amanda
(Also ask: "are these the graphs you want and "select between 2/3 and 5/6/7" and "these will be coming, but if you want more come up with it")

[Cleiti]

UPD: output = folder with pngs and html requiring those pngs is fine. Don't fuck with javascript, it will fuck you back

[Cleiti]

UPD: output folder works. DON'T work on text_stats until #25 closed.