diff --git a/.binder/postBuild b/.binder/postBuild index 48d530c..06472a5 100755 --- a/.binder/postBuild +++ b/.binder/postBuild @@ -3,9 +3,12 @@ set -ex curl -LsSf https://astral.sh/uv/install.sh | sh source $HOME/.cargo/env uv export \ - --extra jupyter \ + --group jupyter \ + --group notebooks \ + --no-dev \ > requirements.txt uv pip install \ --requirement requirements.txt \ --system +rm requirements.txt uv cache clean diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5d2ea1e..0ac6e36 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -28,7 +28,7 @@ on: jobs: doc: - uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2 + uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2.1 permissions: pages: write id-token: write diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index aadc897..9921017 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,7 +9,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.5.0 + rev: 0.5.5 hooks: - id: check-dev-files args: @@ -51,7 +51,7 @@ repos: metadata.vscode - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.0 + rev: v0.7.1 hooks: - id: ruff args: [--fix] @@ -81,11 +81,6 @@ repos: hooks: - id: taplo-format - - repo: https://github.com/ComPWA/taplo-pre-commit - rev: v0.9.3 - hooks: - - id: taplo-format - - repo: https://github.com/pappasam/toml-sort rev: v0.23.1 hooks: @@ -105,6 +100,6 @@ repos: )$ - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.4.24 + rev: 0.4.27 hooks: - id: uv-lock diff --git a/.readthedocs.yml b/.readthedocs.yml index c4b0e32..eef19b7 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -10,7 +10,11 @@ build: pixi global install uv - |- export UV_LINK_MODE=copy - uv run --extra doc --locked --with tox \ + uv run \ + --group doc \ + --locked \ + --no-dev \ + --with tox \ tox -e doc mkdir -p $READTHEDOCS_OUTPUT mv docs/_build/html $READTHEDOCS_OUTPUT diff --git a/docs/eta-pi-p/automated.ipynb b/docs/eta-pi-p/automated.ipynb index 185d608..c012e5a 100644 --- a/docs/eta-pi-p/automated.ipynb +++ b/docs/eta-pi-p/automated.ipynb @@ -537,7 +537,7 @@ " color_id = 0\n", " for recoil_id, ax in enumerate(axes):\n", " decay_products = sorted({0, 1, 2} - {recoil_id})\n", - " key = f\"m_{\"\".join(str(i) for i in decay_products)}\"\n", + " key = f\"m_{''.join(str(i) for i in decay_products)}\"\n", " bin_values, bin_edges = jax.numpy.histogram(\n", " phsp[key].real,\n", " bins=120,\n", diff --git a/docs/lambda-k-pi/ampform.ipynb b/docs/lambda-k-pi/ampform.ipynb index 56d18fa..9b59d11 100644 --- a/docs/lambda-k-pi/ampform.ipynb +++ b/docs/lambda-k-pi/ampform.ipynb @@ -705,7 +705,7 @@ " color_id = 0\n", " for recoil_id, ax in enumerate(axes):\n", " decay_products = sorted({0, 1, 2} - {recoil_id})\n", - " key = f\"m_{\"\".join(str(i) for i in decay_products)}\"\n", + " key = f\"m_{''.join(str(i) for i in decay_products)}\"\n", " bin_values, bin_edges = jax.numpy.histogram(\n", " phsp[key].real,\n", " bins=120,\n", diff --git a/pyproject.toml b/pyproject.toml index c6b9e1d..f80d7c5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,62 +4,50 @@ requires = ["setuptools"] [project] authors = [{name = "Vitor Shen"}] -dependencies = [ - "ampform", - "ampform-dpd", - "graphviz", - "ipympl", - "ipywidgets", - "jax", - "jaxlib", - "matplotlib", - "myst-nb", - "numpy", - "pandas", - "phasespace", - "pre-commit-uv", - "python-lsp-ruff", - "python-lsp-server", - "qrules", - "ruff", - "sphinx-autobuild", - "sphinx-book-theme", - "sphinx-comments", - "sphinx-copybutton", - "sympy", - "tensorflow", - "tensorwaves", -] license = {file = "LICENSE"} name = "gluex-nstar" readme = "README.md" requires-python = ">=3.12" version = "0.1.0" -[project.optional-dependencies] +[dependency-groups] dev = [ - "gluex-nstar[doc]", - "gluex-nstar[jupyter]", - "gluex-nstar[sty]", - "pre-commit-uv", - "tox", + "ruff", + "sphinx-autobuild", + {include-group = "doc"}, + {include-group = "jupyter"}, + {include-group = "test"}, ] doc = [ - "sphinx-autobuild", + "myst-nb", "sphinx-book-theme", "sphinx-comments", "sphinx-copybutton", + {include-group = "notebooks"}, ] jupyter = [ "jupyterlab", - "jupyterlab-code-formatter >=3.0.0", + "jupyterlab-code-formatter", "jupyterlab-git", "jupyterlab-lsp", "jupyterlab-myst", "python-lsp-ruff", "python-lsp-server[rope]", + {include-group = "notebooks"}, +] +notebooks = [ + "ampform", + "ampform-dpd", + "ipympl", + "ipywidgets", + "matplotlib", + "qrules[viz]", + "tensorwaves[jax,pwa]", +] +test = [ + "nbmake", + {include-group = "notebooks"}, ] -sty = ["ruff"] [tool.ruff] extend-include = ["*.ipynb"] @@ -192,6 +180,7 @@ setenv = [testenv:docnb] base = doc description = {[testenv:doc]description} with cached notebook execution +passenv = * setenv = {[testenv:doc]setenv} EXECUTE_NB = yes @@ -199,6 +188,7 @@ setenv = [testenv:docnb-force] base = doc description = {[testenv:doc]description} with notebook execution (no cache) +passenv = * setenv = {[testenv:doc]setenv} FORCE_EXECUTE_NB = yes @@ -238,6 +228,7 @@ setenv = [testenv:docnblive] base = doclive description = {[testenv:doclive]description} with cached notebook execution +passenv = * setenv = {[testenv:doclive]setenv} EXECUTE_NB = yes @@ -254,10 +245,17 @@ description = Check external links in the documentation (requires internet conne setenv = {[testenv:doclive]setenv} +[testenv:nb] +allowlist_externals = + pytest +commands = + pytest --nbmake {posargs:docs} +description = Run all notebooks with pytest + [testenv:sty] allowlist_externals = pre-commit commands = - pre-commit run {posargs} --all-files + pre-commit run --all-files {posargs} description = Perform all linting, formatting, and spelling checks """ diff --git a/uv.lock b/uv.lock index 9926a6c..f15cfe2 100644 --- a/uv.lock +++ b/uv.lock @@ -207,15 +207,6 @@ wheels = [ { url = 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name = "sphinx-autobuild" }, + { name = "ampform" }, + { name = "ampform-dpd" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = "matplotlib" }, + { name = "myst-nb" }, + { name = "qrules", extra = ["viz"] }, { name = "sphinx-book-theme" }, { name = "sphinx-comments" }, { name = "sphinx-copybutton" }, + { name = "tensorwaves", extra = ["jax", "pwa"] }, ] jupyter = [ + { name = "ampform" }, + { name = "ampform-dpd" }, + { name = "ipympl" }, + { name = "ipywidgets" }, { name = "jupyterlab" }, { name = "jupyterlab-code-formatter" }, { name = "jupyterlab-git" }, { name = "jupyterlab-lsp" }, { name = "jupyterlab-myst" }, + { name = "matplotlib" }, { name = "python-lsp-ruff" }, { name = "python-lsp-server", extra = ["rope"] }, + { name = "qrules", extra = ["viz"] }, + { name = "tensorwaves", extra = ["jax", "pwa"] }, ] -sty = [ - { name = "ruff" }, +notebooks = [ + { name = "ampform" }, + { name = "ampform-dpd" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = 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