Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Missing process or function with name 'getFileSystem' #120

Open
arpit20328 opened this issue Mar 23, 2024 · 3 comments
Open

Missing process or function with name 'getFileSystem' #120

arpit20328 opened this issue Mar 23, 2024 · 3 comments
Assignees
@mberacochea
Labels
stale The issue hasn't had any activity for a while

Comments

@arpit20328
Copy link

Missing process or function with name 'getFileSystem'
@mberacochea mberacochea self-assigned this Mar 25, 2024
@mberacochea
Copy link
Member

Hi @arpit20328

Could you elaborate a bit on the error please? Where are you trying to run the pipeline? Which Nextflow version? Which flags are you using for the pipeline?.

Cheers

@arpit20328
Copy link
Author

@mberacochea I ran the following command :

nextflow run virify.nf --illumina *R1.fastq.gz --output /home/arpit/same_Karishma_data_for_virify/ -profile local,docker --viphog true

Nextflow-version: 21.10.6

@mberacochea
Copy link
Member

Hey, alright. 21.10.6 is a fairly old version of Nextflow, can you try running the pipeline with a new one?

Also, can you share the nextflow.log file please?

@mberacochea mberacochea added the stale The issue hasn't had any activity for a while label Jul 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@mberacochea mberacochea

Labels
stale The issue hasn't had any activity for a while
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@mberacochea @arpit20328