Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Simple test command #66

Open
hoelzer opened this issue Feb 28, 2022 · 0 comments
Open

Simple test command #66

hoelzer opened this issue Feb 28, 2022 · 0 comments

Comments

@hoelzer
Copy link
Collaborator

hoelzer commented Feb 28, 2022 •
edited
Loading

The README already provides a simple test command. However, this could be also implemented in the Nextflow version via a test profile. Then, the user can just run

nextflow pull EBI-Metagenomics/emg-viral-pipeline
nextflow run EBI-Metagenomics/emg-viral-pipeline -r v0.4.0 -profile slurm,singularity,test

Here are some examples of such test profile implementations:

https://github.com/hoelzer-lab/rnaflow/
https://github.com/replikation/poreCov
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@hoelzer