Fail to publish CheckV results Warning

[hoelzer]

I am running v1.0 on a HPC w/ SLURM and singularity. Apparently, there is a problem in publishing the output of the CheckV step:

WARN: Failed to publish file: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/work/6e/31afba1ef29fed4df415b69d74c2d0/low_confidence_viral_contigs; to: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/RNA-WW_220421_20-22hmix_cer_trizol_S34_L001/07-checkv/low_confidence_viral_contigs [copy] -- See log file for details
WARN: Failed to publish file: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/work/8a/8cdfebeb9a7dc05ed8658509414ba7/low_confidence_viral_contigs; to: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/RNA-WW_220421_20-22hmix_cer_trizol_S34_L001/07-checkv/low_confidence_viral_contigs [copy] -- See log file for details
WARN: Failed to publish file: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/work/39/17f263614b9a7d46ef6c768e5958e0/low_confidence_viral_contigs; to: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/RNA-WW_220421_20-22hmix_cer_trizol_S34_L001/07-checkv/low_confidence_viral_contigs [copy] -- See log file for details
WARN: Failed to publish file: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/work/dc/c4e9ab9e557386cc5c9f2a849faf8d/low_confidence_viral_contigs; to: /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/RNA-WW_220421_20-22hmix_cer_trizol_S34_L001/07-checkv/low_confidence_viral_contigs [copy] -- See log file for details

Looking closer there are the output files in the work dir, e.g.:

ls /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/work/6e/31afba1ef29fed4df415b69d74c2d0/low_confidence_viral_contigs

complete_genomes.tsv  completeness.tsv  contamination.tsv  proviruses.fna  quality_summary.tsv  tmp  viruses.fna

and I also see the output published in the results dir:

ls /scratch/hoelzerm/projects/2023-01-15-VIRify-wastewater-Wyler/results-RNA116SPAdes-virome/RNA-WW_220421_20-22hmix_cer_trizol_S34_L001/07-checkv/low_confidence_viral_contigs

complete_genomes.tsv  completeness.tsv  contamination.tsv  proviruses.fna  quality_summary.tsv  tmp  viruses.fna

So why the warning?