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Eikonal-Negro-Tirri-Santoro

Overview

This is an implementation of a numerical solver for Eikonal equation.

This is part of a project-work for Advanced Method for Scientific Computing course @Polimi

Authors

Project developed by:

Problem description, Implementation decisions and Result analysis

Can be found into report - documents/Report.pdf

File Structure

  • include - headers files where:

    • Mesh.h - defines the data structure containing the mesh
    • VtkParser.hpp - defines data structure and methods in order to parse a .vtk file
    • MeshLoader.hpp - defines methods in order to load a mesh from a file parser
    • EikonalSolver.hpp - defines Eikonal global problem solver
    • EikonalTraits.hpp - defines some Data Structure for Eikonal problem traits
    • LocalSolver.hpp - defines Eikonal local problem solver
    • OptimizedLocalSolver.hpp - defines Eikonal Optimized local problem solver
    • EikonalMath.hpp - defines common mathematical method implementations

  • include-cuda - headers files for cuda implemented function wrapping

    • GlobalSolverKernel.hpp - defines function wrappers for global solver functions
    • LocalSolverKernel.hpp - defines function wrappers for local solver functions

  • src - source files of headers implementation

  • src-cuda - source files of cuda function implementation

  • testfiles_torus_tetra - collection of .vtk file containing tetrahedrical test mesh

  • testfiles_torus_tri - collection of .vtk file containing triangular test mesh

  • showcase - collection of reference results images

  • documents - collection of reference papers and implementation report

Build dependencies

In order to build all targets the following software libraries must be installed:

In order to build cuda targets version the following libraris must be installed:

Since installing methods can variate between linux distribution we do not provide any installation tutorial for the above libraries.

How to build

In order to build the executable, from the root folder run the following commands:

$ mkdir build
$ cd build
$ cmake .. _FLAGS_
$ make

_FLAGS_ are optional, they can be:

  • -D EIGEN_PATH='/path/to/eigen3' - specify eigen3 library path
  • -D OMP_NUM_THREADS=_num_threads_ - specify the number of threads used by omp implementation
  • -D VERBOSE=true/false - specify if you want to enable all verbose options
  • -D SOLVER_VERBOSE=true/false - specify if show local solver work-messages
  • -D EXE_NAME='_exe_filename_' - specify the executable filename (default = eikonal_solver_'method_tag')
  • -D USECUDA=(1 or 0) - specify if you want to compile the cuda target
  • -D CMAKE_CUDA_COMPILER= - if you want compile the cuda target it's best to specify the nvcc path, if cuda toolkit is alredy in path it's should not be neccesary
  • -D IO_VERBOSE=true/false - specify if you want to enable verbose option for vtk file reading and writing
  • -D METIS_LIB='path/to/metis.so' - specify path to metis shared object
  • -D MAKETEST=(1 or 0) - specify if compile alternative test targets

output executables will be:

  • eikonal_solver_FMM - Fast Marching Method
  • eikonal_solver_FIMP - Fast Iterative Parallel Method
  • eikonal_solver_FMMO - Fast Marching Method with Optimized Local solver
  • eikonal_solver_FIM - Fast Iterative Method
  • eikonal_solver_PFIM - Patch Fast Iterative Method
  • eikonal_solver_PFIMC - Patch Fast Iterative Method on GPU

if MAKETEST=1 the output executables will be

  • eikonal_test_FMM - Fast Marching Method tester
  • eikonal_test_FIMP - Fast Iterative Parallel Method tester
  • eikonal_test_FMMO - Fast Marching Method with Optimized Local Solver tester
  • eikonal_test_FIM - Fast Iterative Method tester
  • eikonal_test_PFIM - Patch Fast Iterative Method tester
  • eikonal_test_PFIMC - Patch Fast Iterative Method on GPU tester

How to run solver

$ ./eikonal_solver_* input.vtk output.vtk meshdim id1 [id2 ...]

where:

  • input.vtk - is a path/filename to ASCII formatted .vtk input mesh file
  • output.vtk - is the path/filename where output (mesh + data) will be placed
  • meshdim - is the mesh size (3=triangular mesh, 4=tetrahedral mesh)
    • physical dimension is assumed to be always 3,
      be careful .vtk file to be appropriately formatted
  • id1 - the .vtk point index of wave starting point [$u(id_1) = 0$]
  • [id2 ...] - optional list of other starting points

How to run tester

$ ./eikonal_test_* input_dir_path output.csv meshdim

where:

  • input_dir_path - is a path to a dir containing only ASCII formatted .vtk input mesh files
  • output.csv - is the path/filename where output (test result) will be placed
  • meshdim - is the mesh size (3=triangular mesh, 4=tetrahedral mesh)
    • physical dimension is assumed to be always 3,
      be careful .vtk file to be appropriately formatted

Examples showcase

Triangular Mesh

Tetrahedral Mesh