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test-paper-notebooks.yml
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name: "[test] test siibra-paper notebooks"
on:
push:
branches: ["main", "refactor_attr"]
pull_request:
branches: ["*"]
jobs:
test_tutorials:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -U .
pip install matplotlib jupyter
apt-get install pandoc
- name: Run notebooks with nbmake
run: |
for notebook in $(find ./paper_notebooks -type f)
do
echo "jupyter execute $notebook --allow-errors --inplace"
jupyter execute $notebook --allow-errors --inplace
echo "jupyter nbconvert --to pdf $notebook"
jupyter nbconvert --to pdf $notebook
done
- name: Archive code coverage results
uses: actions/upload-artifact@v4
with:
name: Notebook PDFs
path: paper_notebooks/*.pdf