diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index 7258e29e..b9b907c6 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -2,6 +2,9 @@ This is a document describing new functionality, bug fixes, breaking changes, etc. associated with Selene version releases from v0.5.0 onwards. +## Version 0.5.3 +- Adjust dependency requirements + ## Version 0.5.2 - Fix Cython type error causing build issues with Python 3.9+ diff --git a/pyproject.toml b/pyproject.toml index d5a66840..ba58a080 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["setuptools", "wheel", "numpy>=1.26.4", "cython>=3.0.10"] +requires = ["setuptools", "wheel", "numpy>=1.21.4", "cython>=0.29.24"] [tool.poetry.dependencies] python = ">=3.9" diff --git a/selene-cpu.yml b/selene-cpu.yml index 14910672..fac99da0 100644 --- a/selene-cpu.yml +++ b/selene-cpu.yml @@ -5,12 +5,12 @@ channels: - defaults - conda-forge dependencies: - - cython=0.29.3 + - cython=0.29.24 - click==7.1.2 - docopt=0.6.2 - h5py=2.9.0 - matplotlib=2.0.2 - - numpy=1.15.1 + - numpy=1.21.4 - pandas=0.20.3 - python=3.6.2 - pyyaml=5.1 @@ -19,7 +19,7 @@ dependencies: - seaborn=0.8.1 - setuptools=27.2.0 - statsmodels=0.8.0 - - pytorch=0.4.1 + - pytorch=1.11.0 - plotly=2.7.0 - pyfaidx=0.5.5.2 - pytabix=0.0.2 diff --git a/selene_sdk/version.py b/selene_sdk/version.py index 72251527..43a1e95b 100644 --- a/selene_sdk/version.py +++ b/selene_sdk/version.py @@ -1 +1 @@ -__version__ = "0.5.2" +__version__ = "0.5.3" diff --git a/setup.py b/setup.py index a3737824..cf8140b8 100644 --- a/setup.py +++ b/setup.py @@ -25,7 +25,7 @@ cmdclass = {'build_ext': build_ext} setup(name="selene-sdk", - version="0.5.2", + version="0.5.3", long_description=long_description, long_description_content_type='text/markdown', description=("framework for developing sequence-level " @@ -50,11 +50,11 @@ cmdclass=cmdclass, python_requires='>=3.9', install_requires=[ - "cython>=3.0.10", + "cython>=0.29.24", 'click', "h5py", "matplotlib>=2.2.3", - "numpy>=1.26.4", + "numpy>=1.21.4", "pandas", "plotly", "pyfaidx",