DESCRIPTION

Package: deMULTIplex2
Type: Package
Title: deMULTIplex2: robust sample demultiplexing for scRNA-seq
Version: 1.0.2
Date: 2023-04-12
Author: Qin Zhu, Daniel N. Conrad, Zev J. Gartner
Maintainer: Qin Zhu <qin.zhu@ucsf.edu>
Description: Demultiplex2 is a bioinformatics algorithm for demultiplexing multiplexed single cell datasets. It is built on a statistical model of tag read counts derived from the physical mechanism of tag cross-contamination. See Zhu Q, Conrad DN, Gartner ZJ (2023)  <doi:10.1101/2023.04.11.536275> for details.
Depends:
    R (>= 3.5.0)
Imports:
    tidyr,
    magrittr,
    dplyr,
    Matrix,
    MASS,
    RColorBrewer,
    ggplot2,
    grid,
    gridExtra,
    viridis,
    ggExtra,
    stringdist,
    ShortRead,
    data.table,
    uwot,
    XVector,
    devtools
Suggests:
    ggrastr
License: CC BY 4.0
Encoding: UTF-8
LazyLoad: yes
LazyData: true
biocViews: Software, Sequencing, RNASeq
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3