You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Second, following the instructions I ran into an error when I want to visual the gene velocity :
gene_list=['GATA1','KLF1','EKLF','CEBPB','ID3','EBF1','RUNX2']
ncols=5
height=math.ceil(len(gene_list)/5)*4
fig = plt.figure(figsize=(20,height))
for i in range(len(gene_list)):
ax = fig.add_subplot(math.ceil(len(gene_list)/ncols), ncols, i+1)
cdplt.scatter_gene(
ax=ax,x='splice',y='unsplice',
cellDancer_df=cellDancer_df,
custom_xlim=None,
custom_ylim=None,
colors=colormap.colormap_erythroid,
alpha=0.5,
s = 5,
velocity=True,
gene=gene_list[i])
ax.set_title(gene_list[i])
ax.axis('off')
plt.show()
And I encountered:
Traceback (most recent call last):
File "", line 12, in
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/celldancer/plotting/gene.py", line 126, in scatter_gene
edgecolor="none")
File "/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/init.py", line 1414, in inner
return func(ax, *map(sanitize_sequence, args), **kwargs)
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4388, in scatter
get_next_color_func=self._get_patches_for_fill.get_next_color)
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4226, in _parse_scatter_color_args
raise invalid_shape_exception(c.size, xsize) from err
ValueError: 'c' argument has 4895 elements, which is inconsistent with 'x' and 'y' with size 0.
The text was updated successfully, but these errors were encountered:
Dear CellDancer team,
First, The website of CellDancer (https://guangyuwanglab2021.github.io/cellDancer_website/index.html#) couldn't display completely when I logged on, so I asked the IT staff that there was a problem with the website. Can you solve it?
Second, following the instructions I ran into an error when I want to visual the gene velocity :
gene_list=['GATA1','KLF1','EKLF','CEBPB','ID3','EBF1','RUNX2']
ncols=5
height=math.ceil(len(gene_list)/5)*4
fig = plt.figure(figsize=(20,height))
for i in range(len(gene_list)):
ax = fig.add_subplot(math.ceil(len(gene_list)/ncols), ncols, i+1)
cdplt.scatter_gene(
ax=ax,x='splice',y='unsplice',
cellDancer_df=cellDancer_df,
custom_xlim=None,
custom_ylim=None,
colors=colormap.colormap_erythroid,
alpha=0.5,
s = 5,
velocity=True,
gene=gene_list[i])
ax.set_title(gene_list[i])
ax.axis('off')
plt.show()
And I encountered:
Traceback (most recent call last):
File "", line 12, in
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/celldancer/plotting/gene.py", line 126, in scatter_gene
edgecolor="none")
File "/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/init.py", line 1414, in inner
return func(ax, *map(sanitize_sequence, args), **kwargs)
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4388, in scatter
get_next_color_func=self._get_patches_for_fill.get_next_color)
File "
/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4226, in _parse_scatter_color_args
raise invalid_shape_exception(c.size, xsize) from err
ValueError: 'c' argument has 4895 elements, which is inconsistent with 'x' and 'y' with size 0.
The text was updated successfully, but these errors were encountered: