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How to select gene list #25

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mabaoweireadingene opened this issue Jan 12, 2024 · 1 comment
Open

How to select gene list #25

mabaoweireadingene opened this issue Jan 12, 2024 · 1 comment

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@mabaoweireadingene
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Hi Doc
ex:
gene_list=['Smarca2', 'Rbms2', 'Myo1b', 'Hba-x', 'Yipf5', 'Skap1', 'Smim1', 'Nfkb1', 'Sulf2', 'Blvrb', 'Hbb-y', 'Coro2b', 'Yipf5', 'Phc2', 'Mllt3']

loss_df, cellDancer_df=cd.velocity(cell_type_u_s,
gene_list=gene_list,
permutation_ratio=0.125,
n_jobs=8)

I don't know how to selsect gene_list for my analysis, could you give some advises?
Thanks

@Abclisy
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Abclisy commented Mar 15, 2024

Hello,

Thank you for reaching out. The preprocessing example allows you to obtain the top 2000 genes. You can also specify your top n genes.

For finding genes of interest, this issue might be helpful.

Best,
Shengyu

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