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Hi Doc ex: gene_list=['Smarca2', 'Rbms2', 'Myo1b', 'Hba-x', 'Yipf5', 'Skap1', 'Smim1', 'Nfkb1', 'Sulf2', 'Blvrb', 'Hbb-y', 'Coro2b', 'Yipf5', 'Phc2', 'Mllt3']
loss_df, cellDancer_df=cd.velocity(cell_type_u_s, gene_list=gene_list, permutation_ratio=0.125, n_jobs=8)
I don't know how to selsect gene_list for my analysis, could you give some advises? Thanks
The text was updated successfully, but these errors were encountered:
Hello,
Thank you for reaching out. The preprocessing example allows you to obtain the top 2000 genes. You can also specify your top n genes.
For finding genes of interest, this issue might be helpful.
Best, Shengyu
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Hi Doc
ex:
gene_list=['Smarca2', 'Rbms2', 'Myo1b', 'Hba-x', 'Yipf5', 'Skap1', 'Smim1', 'Nfkb1', 'Sulf2', 'Blvrb', 'Hbb-y', 'Coro2b', 'Yipf5', 'Phc2', 'Mllt3']
loss_df, cellDancer_df=cd.velocity(cell_type_u_s,
gene_list=gene_list,
permutation_ratio=0.125,
n_jobs=8)
I don't know how to selsect gene_list for my analysis, could you give some advises?
Thanks
The text was updated successfully, but these errors were encountered: