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Unable to locate temp file while merging results #187

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xmi215 opened this issue Jan 12, 2024 · 0 comments
Open

Unable to locate temp file while merging results #187

xmi215 opened this issue Jan 12, 2024 · 0 comments

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@xmi215
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xmi215 commented Jan 12, 2024

Hello,

I keep running into an error about not being able to locate a temp file towards the end of my jobs and would really appreciate your help and guidance on how to troubleshoot it:

....
Mapping done for process 134719. Processed 12,798,837 reads
Processed 1,000,000 reads in 4.917 seconds. Total reads: 7,000,000 in child 134728
Processed 1,000,000 reads in 5.97 seconds. Total reads: 8,000,000 in child 134728
Processed 1,000,000 reads in 5.046 seconds. Total reads: 9,000,000 in child 134728
Processed 1,000,000 reads in 5.295 seconds. Total reads: 10,000,000 in child 134728
Processed 1,000,000 reads in 6.769 seconds. Total reads: 11,000,000 in child 134728
Processed 1,000,000 reads in 5.164 seconds. Total reads: 12,000,000 in child 134728
Mapping done for process 134728. Processed 12,798,819 reads
Merging results
Traceback (most recent call last):
File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/bin/CITE-seq-Count", line 8, in
sys.exit(main())
File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/lib/python3.7/site-packages/cite_seq_count/main.py", line 418, in main
os.remove(file_path)
FileNotFoundError: [Errno 2] No such file or directory: './temp_6'

All the temp files including temp_0 to temp_6 were generated and present in the directory while the job was running but now only temp_7 to temp_25 files are found in the directory.

Please let me know if you have any suggestions to try. I would greatly appreciate your time and help!

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