.travis.yml

language: python
python:
  - "3.6"

branches:
  only:
    - master
    - develop

install:
  - sudo apt-get update
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  # Useful for debugging any issues with conda
  - conda info -a
  - conda config --add channels defaults
  - conda config --add channels conda-forge
  - conda config --add channels bioconda
  - conda install -c bioconda -c conda-forge snakemake
  - conda create -q -n snakemake snakemake>=5.3.1 python=$TRAVIS_PYTHON_VERSION
script:
  # run the workflow
  - snakemake --use-conda --directory .test -p

after_success:
  - cd docs && snakemake --use-conda build_docs

deploy:
  provider: pages
  skip-cleanup: true
  github-token: $GITHUB_PAT
  keep-history: true
  local-dir: docs/site
  on:
    branch: master