Spatial data plot visualization requirements

[adkinsrs]

1. spatial image
2. UMAP and violin plots
3. Focus on smaller region
4. ProjectR integration
   1. This leads to visualizing cell types.

This is a list in flux

[adkinsrs]

Potentially 3-4 panel plot

• Expression
• UMAP
• Violin
• Cell type

[adkinsrs]

Opened branch "feature-spatial-visualization" to address this

[adkinsrs]

First pass at a 4-panel plot using a selection of genes. This was made in a Jupyter notebook, hence the dark theming. I used a combination of scanpy and matplotlib to make this. Note I removed the colorbar from the stacked violin plot because the scanpy people removed the colorbar with their own horizontal "legend" object, and I could not create a vertical colorbar using their StackedViolin figure object.

[adkinsrs]

Notebook found at 809996e