catalog-v3.xml

<?xml version="1.0"?>
<!DOCTYPE catalog PUBLIC
"-//OASIS//DTD Entity Resolution XML Catalog V3.0//EN"
"http://www.oasis-open.org/committees/entity/release/1.0/catalog.dtd">

<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"
         prefer="public">

<!-- ============================================================= -->
<!--  MODULE:    An OASIS XML Catalog (not a DTD Suite module)     -->
<!--  VERSION:   3.0                                               -->
<!--  DATE:      Feb 2008                                          -->
<!--                                                               -->
<!-- ============================================================= -->

<!-- ============================================================= -->
<!-- SYSTEM:     Archiving and Interchange DTD Suite               -->
<!--                                                               -->
<!-- PURPOSE:    To make the connection between PUBLIC identifiers -->
<!--             for DTD Suite modules and their URIs              -->
<!--                                                               -->
<!-- CONTAINS:   1) Scope of Catalog                               -->
<!--             2) Catalog organization comment                   -->
<!--             3) How to set up a catalog                        -->
<!--             4) PUBLIC/SYSTEM identifier map                   -->
<!--                  a. NLM Journal Publishing DTD (Blue)         -->
<!--                  b. NLM Journal Archiving and Interchange     -->
<!--                        DTD (Green)                            -->
<!--                  c. NLM Journal Authoring DTD (Pumpkin)       -->
<!--                  d. NLM Book DTD (Purple: includes Book       -->
<!--                       Collection DTD and Historical Book DTD) -->
<!--                  e. Archiving and Interchange DTD Suite       -->
<!--                       common (shared) modules                 -->
<!--                  f. Suite common (shared) modules from        -->
<!--                       external sources (table models,         -->
<!--                       general entity sets, etc.)              -->
<!--                                                               -->
<!-- CREATED FOR:                                                  -->
<!--             Digital Archive of Journal Articles               -->
<!--             National Center for Biotechnology Information     -->
<!--                (NCBI)                                         -->
<!--             National Library of Medicine (NLM)                -->
<!--                                                               -->
<!-- ORIGINAL CREATION DATE:                                       -->
<!--             June 2002                                         -->
<!--                                                               -->
<!--             Suggestions for refinements and enhancements to   -->
<!--             this DTD should be sent in email to:              -->
<!--                 archive-dtd@ncbi.nlm.nih.gov                  -->
<!-- ============================================================= -->


<!-- ============================================================= -->
<!--                    DTD VERSION/CHANGE HISTORY                 -->
<!-- ============================================================= -->
<!--
     =============================================================

Version  Reason/Occasion                   (who) vx.x (yyyy-mm-dd)

     =============================================================
     Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)

     Version 3.0 is the first non-backward-compatible release.
     In addition to the usual incremental changes, some
     elements and attributes have been renamed and/or remodeled
     to better meet user needs and to increase tag set consistency.
     All module change histories are available through the Tag Suite
     web site at http://dtd.nlm.nih.gov.

     Details on version 3.0 are available at
           http://dtd.nlm.nih.gov/3.0.

  1. Updated public identifiers to "v3.0 20080202//EN"
     fresh start.

 	 =============================================================
	 									  (LAK) v3.0 (2008-12-2)

  1. Updated PUBLIC identifier for Archiving DTD using OASIS
   	 table models.
  2. Added declaration for funding3.ent.							-->


<!-- ============================================================== -->
<!--                    SCOPE (Suite Version 3.0)                   -->
<!-- ============================================================== -->

<!-- This catalog is made up of several groups, each with its own
     xml:base attribute, for:

       - NLM Journal Publishing DTD (Blue)
       - NLM Journal Archiving and Interchange DTD (Green)
       - NLM Journal Authoring DTD (Pumpkin)
       - NLM Book DTD (Purple: includes Book Collection DTD)
       - Archiving and Interchange DTD Suite common (shared) modules
       - Suite common (shared) modules from external sources
            (table models, general entity sets, etc.)               -->

<!-- ============================================================== -->
<!--                    CATALOG ORGANIZATION                        -->
<!-- ============================================================== -->

<!--  GROUPS AND ENTRIES

     Entries are grouped into logical clusters, organized by the
     particular DTD variant.

     Each catalog entry associates a PUBLIC identifier with a SYSTEM
     identifier.

     The SYSTEM identifier is resolved with respect to the xml:base
     attribute which is set on the group element. Thus, for example:

        xml:base="file:///C:/Work/Tasks/DTDJournal/"
        +
        uri="journalpublishing.dtd"
        =
        file:///C:/Work/Tasks/DTDJournal/journalpublishing.dtd

     The XML looks like this:

     <group xml:base="file:///C:/Work/Tasks/DTDJournal/">

       <public publicId="-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN"
               uri="journalpublishing3.dtd"/>
       ...
     </group>
                                                                    -->


<!-- ============================================================== -->
<!--                    HOW TO SET UP                               -->
<!-- ============================================================== -->

<!-- The OASIS catalog and the NCBI Suite of Modules provide a wide
     range of flexibility for setting up. Here are two easy ways to
     do it:


     1. WITHOUT an OASIS catalog (DTD components on a local system):

        - unzip the DTD packages you want to use into a single
          directory:

            - the journal-publishing package
            - the archive article package
            - the journal-authoring package
            - the book package

        - create your own DTD customization, if you need to,
          anywhere, using local (relative or absolute) SYSTEM
          identifiers to reference DTD modules.

        - create a document instance anywhere, and point its
          SYSTEM identifier to your customized DTD or to the
          package DTD you have chosen to use, using a local
          (relative or absolute) SYSTEM identifier.

        The SYSTEM identifiers used in the DTD modules are relative
        to the directory in which you have placed the DTD package
        and your customized DTD, and so your editor/processor will
        find them when reading the DTD.

     2. WITH this OASIS catalog (DTD components on a local system):

        - unzip the DTD packages you want to use into a single
          directory, or into separate directories.

        - in this file (the catalog), edit the xml:base attribute
          on the <group> elements.

          Here are instructions for the two most likely
          configurations:

             - if you have unzipped only one of the DTD packages
               (journal, archive article, journal-authoring, or
               book):

                - set the xml:base attribute on the corresponding
                  <group> element in this catalog to the directory
                  where you put the unzipped components,

                - AND set the xml:base attribute on the last
                  two groups in this catalog (the modular library
                  and the public models) to that same directory.

             - if you have unzipped more than one DTD package into
               a single directory:

                 - set all xml:base attributes to that directory.

        - create your own DTD customization, if you need to,
          anywhere, using PUBLIC identifiers to reference the
          DTD modules.

        - tell your editor/processor about this OASIS catalog
          (NB: many apps must be closed and relaunched when
          a catalog file is first specified AND when it is changed)

        - create a document instance anywhere, and point its
          SYSTEM identifier to the DTD you want to use, giving
          an absolute or relative SYSTEM path.

        Your editor/processor will map the PUBLIC identifiers
        in the DTD to the SYSTEM identifiers specified in
        this catalog, using xml:base to locate their whereabouts.   -->


<!-- ============================================================== -->
<!--                    PUBLIC-SYSTEM IDENTIFIER MAP                -->
<!-- ============================================================== -->


<!-- ============================================================== -->
<!--                    JOURNAL PUBLISHING DTD (BLUE)               -->
<!-- ============================================================== -->

<group xml:base="file:///C:/Work/Tasks/DTDJournal/"
         prefer="public">

  <public publicId="-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN"
               uri="journalpublishing3.dtd"/>

  <public publicId="-//NLM//DTD Journal Publishing DTD-Specific Modules v3.0 20080202//EN"
               uri="journalpubcustom-modules3.ent"/>

  <public publicId="-//NLM//DTD Journal Publishing DTD Customize Classes Module v3.0 20080202//EN"
               uri="journalpubcustom-classes3.ent"/>

  <public publicId="-//NLM//DTD Journal Publishing DTD Customize Mixes Module v3.0 20080202//EN"
               uri="journalpubcustom-mixes3.ent"/>

  <public publicId="-//NLM//DTD Journal Publishing DTD Customize Content and Attributes Module v3.0 20080202//EN"
               uri="journalpubcustom-models3.ent"/>

  <public publicId="-//NLM//DTD NLM Citation v3.0 20080202//EN"
               uri="nlmcitation.ent3"/>

</group>


<!-- ============================================================== -->
<!--                    JOURNAL ARTICLE ARCHIVING DTD (GREEN)       -->
<!-- ============================================================== -->


<group xml:base="file:///C:/Work/Tasks/DTDArchiving/"
         prefer="public">

  <public publicId="-//NLM//DTD Journal Archiving and Interchange DTD v3.0 20080202//EN"
               uri="archivearticle3.dtd"/>

  <public publicId="-//NLM//DTD Journal Archiving DTD-Specific Modules v3.0 20080202//EN"
               uri="archivecustom-modules3.ent"/>

  <public publicId="-//NLM//DTD Journal Archiving DTD Customize Classes Module v3.0 20080202//EN"
               uri="archivecustom-classes3.ent"/>

  <public publicId="-//NLM//DTD Journal Archiving DTD Customize Mixes Module v3.0 20080202//EN"
               uri="archivecustom-mixes3.ent"/>

  <public publicId="-//NLM//DTD Journal Archiving DTD Customize Content and Attributes Module v3.0 20080202//EN"
               uri="archivecustom-models3.ent"/>

</group>


<!-- ============================================================== -->
<!--                    JOURNAL ARTICLE AUTHORING DTD (PUMPKIN)     -->
<!-- ============================================================== -->


<group xml:base="file:///C:/Work/Tasks/DTDAuthoring/"
         prefer="public">

  <public publicId="-//NLM//DTD Article Authoring DTD v3.0 20080202//EN"
               uri="articleauthoring3.dtd"/>

  <public publicId= "-//NLM//DTD Article Authoring DTD-Specific Modules v3.0 20080202//EN"
               uri="articleauthcustom-modules3.ent"/>

  <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Classes Module v3.0 20080202//EN"
               uri="articleauthcustom-classes3.ent"/>

  <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Mixes Module v3.0 20080202//EN"
               uri="articleauthcustom-mixes3.ent"/>

  <public publicId= "-//NLM//DTD Article Authoring DTD Over-ride Content and Attribute Module v3.0 20080202//EN"
               uri="articleauthcustom-models3.ent"/>

</group>

<!-- ============================================================== -->
<!--                    NCBI BOOK DTDS (PURPLE)                     -->
<!-- ============================================================== -->

<group xml:base="file:///C:/Work/Tasks/DTDBook/"
         prefer="public">

<!-- .............................................................. -->
<!--                    NCBI BOOK DTD                               -->
<!-- .............................................................. -->

  <public publicId="-//NLM//DTD Book DTD v3.0 20080202//EN"
               uri="book3.dtd"/>


  <public publicId="-//NLM//DTD Book DTD Module of Modules v3.0 20080202//EN"
               uri="bookcustom-modules3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book DTD Over-ride Classes Module v3.0 20080202//EN"
               uri="bookcustom-classes3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book DTD Over-ride Mixes Module v3.0 20080202//EN"
               uri="bookcustom-mixes3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book DTD Content and Attribute Over-ride Module v3.0 20080202//EN"
               uri="bookcustom-models3.ent"/>


  <public publicId="-//NLM//DTD NCBI Book Image Map Elements v3.0 20080202//EN"
               uri="bookimagemap3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book DTD Book Metadata Elements v3.0 20080202//EN"
               uri="bookmeta3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book Multi-link Elements v3.0 20080202//EN"
               uri="bookmultilink3.ent"/>

  <public publicId="-//NLM//DTD NCBI Book DTD Book Component Metadata Elements v3.0 20080202//EN"
               uri="bookpart3.ent"/>

<!-- .............................................................. -->
<!--                    NCBI BOOK COLLECTION DTD                    -->
<!--                    Uses all the book-specific modules above    -->
<!-- .............................................................. -->


  <public publicId="-//NLM//DTD NCBI Book Collection DTD v3.0 20080202//EN"
               uri="bookcollection3.dtd"/>



</group>

<!-- ============================================================== -->
<!--                    JOURNAL ARTICLE ARCHIVING OASIS DTD         -->
<!-- ============================================================== -->


<group xml:base="file:///C:/Work/Tasks/DTDArchiving-OASIS/"
         prefer="public">

 <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables v3.0 20080202//EN"
               uri="archive-oasis-article3.dtd"/>

 <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables-Specific Modules v3.0 20080202//EN"
               uri="archive-oasis-custom-modules3.ent"/>

 <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables Customize Classes Module v3.0 20080202//EN"
               uri="archive-oasis-custom-classes3.ent"/>

 <public publicId="-//NLM//DTD Journal Archiving with OASIS Tables Customize Mixes Module v3.0 20080202//EN"
               uri="archive-oasis-custom-mixes3.ent"/>

</group>


<!-- ============================================================== -->
<!--                    JOURNAL PUBLISHING OASIS DTD         		-->
<!-- ============================================================== -->


<group xml:base="file:///C:/Work/Tasks/DTDJournal-OASIS/"
         prefer="public">

 <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN"
               uri="journalpub-oasis3.dtd"/>

 <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables-Specific Modules v3.0 20080202//EN"
               uri="journalpub-oasis-custom-modules3.ent"/>

 <public publicId="-//NLM//DTD Journal Publishing with OASIS Tables Customize Classes Module v3.0 20080202//EN"
               uri="journalpub-oasis-custom-classes3.ent"/>


</group>



<!-- ============================================================== -->
<!--                    ARCHIVING AND INTERCHANGE DTD SUITE         -->
<!--                    MODULAR LIBRARY                             -->
<!-- ============================================================== -->

<group xml:base="file:///C:/Work/Tasks/Common/"
         prefer="public">

<!--                    MODULE OF MODULES                           -->

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v3.0 20080202//EN"
               uri="modules3.ent"/>


<!--                    CLASSES AND MIXES                           -->

  <public publicId="-//NLM//DTD Default Element Classes Module v3.0 20080202//EN"
               uri="default-classes3.ent"/>

  <public publicId="-//NLM//DTD Default Element Mixes Module v3.0 20080202//EN"
               uri="default-mixes3.ent"/>


<!--                    ELEMENT COMMON (SHARED) ELEMENTS/CHARACTERS -->

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Common (Shared) Elements Module v3.0 20080202//EN"
  			   uri="common3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Funding Elements v3.0 20080202//EN"
			   uri="funding3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Notation Declarations v3.0 20080202//EN"
               uri="notat3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite XML Special Characters Module v3.0 20080202//EN"
               uri="xmlspecchars3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Custom Special Characters Module v3.0 20080202//EN"
               uri="chars3.ent"/>


<!--                    CLASS MODULES                               -->

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Journal Article Metadata Elements v3.0 20080202//EN"
               uri="articlemeta3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Back Matter Elements v3.0 20080202//EN"
               uri="backmatter3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Display Class Elements v3.0 20080202//EN"
               uri="display3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Formatting Element Classes v3.0 20080202//EN"
               uri="format3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Journal Metadata Elements v3.0 20080202//EN"
               uri="journalmeta3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Link Class Elements v3.0 20080202//EN"
               uri="link3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite List Class Elements v3.0 20080202//EN"
               uri="list3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Math Class Elements v3.0 20080202//EN"
               uri="math3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Paragraph-Like Elements v3.0 20080202//EN"
               uri="para3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Subject Phrase Class Elements v3.0 20080202//EN"
               uri="phrase3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Bibliographic Reference (Citation) Class Elements v3.0 20080202//EN"
               uri="references3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Related Object Element v3.0 20080202//EN"
               uri="related-object3.ent"/>

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite Section Class Elements v3.0 20080202//EN"
               uri="section3.ent"/>


<!--                    SET UP TABLES                              -->

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite XHTML Table Setup Module v3.0 20080202//EN"
               uri="XHTMLtablesetup3.ent"/>


  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite OASIS XML Table Setup Module v1.2 20040830//EN"
               uri="oasis-tablesetup3.ent"/>

<!--                    SET UP MATHML                              -->

  <public publicId="-//NLM//DTD Archiving and Interchange DTD Suite MathML Setup Module v3.0 20080202//EN"
               uri="mathmlsetup3.ent"/>

</group>


<!-- ============================================================= -->
<!--                    COMMONLY-USED PUBLIC MODELS AND PUBLIC     -->
<!--                    CHARACTER-ENTITY SETS USED IN THE SUITE    -->
<!-- ============================================================= -->

<group xml:base="file:///C:/Work/Entities/"
         prefer="public">

<!-- .............................................................. -->
<!--                    TABLES: XHTML TABLE MODULES                 -->
<!-- .............................................................. -->

  <public publicId="-//W3C//ELEMENTS XHTML Tables 1.0//EN"
               uri="xhtml-table-1.mod"/>

  <public publicId="-//W3C//ENTITIES XHTML Inline Style 1.0//EN"
               uri="xhtml-inlstyle-1.mod"/>


<!-- .............................................................. -->
<!--                    TABLES: OASIS EXCHANGE TABLE MODULES        -->
<!-- .............................................................. -->

  <public publicId="-//OASIS//DTD XML Exchange Table Model 19990315//EN"
               uri="oasis-exchange.ent"/>

<!-- .............................................................. -->
<!--                    MATHML MODULES                              -->
<!-- .............................................................. -->

  <public publicId="-//W3C//DTD MathML 2.0//EN"
               uri="mathml2.dtd"/>

  <public publicId="-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN"
               uri="mathml2-qname-1.mod"/>

  <public publicId="-//W3C//ENTITIES Extra for MathML 2.0//EN"
               uri="mathml/mmlextra.ent"/>

  <public publicId="-//W3C//ENTITIES Aliases for MathML 2.0//EN"
               uri="mathml/mmlalias.ent"/>


<!-- .............................................................. -->
<!--                    ISO 8879 ENTITIES                           -->
<!-- .............................................................. -->


  <public publicId="-//W3C//ENTITIES Box and Line Drawing for MathML 2.0//EN"
               uri="iso8879/isobox.ent"/>

  <public publicId="-//W3C//ENTITIES Russian Cyrillic for MathML 2.0//EN"
               uri="iso8879/isocyr1.ent"/>

  <public publicId="-//W3C//ENTITIES Non-Russian Cyrillic for MathML 2.0//EN"
               uri="iso8879/isocyr2.ent"/>

  <public publicId="-//W3C//ENTITIES Diacritical Marks for MathML 2.0//EN"
               uri="iso8879/isodia.ent"/>

  <public publicId="-//W3C//ENTITIES Added Latin 1 for MathML 2.0//EN"
               uri="iso8879/isolat1.ent"/>

  <public publicId="-//W3C//ENTITIES Added Latin 2 for MathML 2.0//EN"
               uri="iso8879/isolat2.ent"/>

  <public publicId="-//W3C//ENTITIES Numeric and Special Graphic for MathML 2.0//EN"
               uri="iso8879/isonum.ent"/>

  <public publicId="-//W3C//ENTITIES Publishing for MathML 2.0//EN"
               uri="iso8879/isopub.ent"/>

<!-- .............................................................. -->
<!--                    ISO 9573-13 ENTITIES                        -->
<!-- .............................................................. -->

  <public publicId="-//W3C//ENTITIES General Technical for MathML 2.0//EN"
               uri="iso9573-13/isotech.ent"/>

  <public publicId="-//W3C//ENTITIES Greek Symbols for MathML 2.0//EN"
               uri="iso9573-13/isogrk3.ent"/>

  <public publicId="-//W3C//ENTITIES Math Alphabets: Script for MathML 2.0//EN"
               uri="iso9573-13/isomscr.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Arrow Relations for MathML 2.0//EN"
               uri="iso9573-13/isoamsa.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Binary Operators for MathML 2.0//EN"
               uri="iso9573-13/isoamsb.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Delimiters for MathML 2.0//EN"
               uri="iso9573-13/isoamsc.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Negated Relations for MathML 2.0//EN"
               uri="iso9573-13/isoamsn.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Ordinary for MathML 2.0//EN"
               uri="iso9573-13/isoamso.ent"/>

  <public publicId="-//W3C//ENTITIES Added Math Symbols: Relations for MathML 2.0//EN"
               uri="iso9573-13/isoamsr.ent"/>

  <public publicId="-//W3C//ENTITIES Math Alphabets: Fraktur for MathML 2.0//EN"
               uri="iso9573-13/isomfrk.ent"/>

  <public publicId="-//W3C//ENTITIES Math Alphabets: Open Face for MathML 2.0//EN"
               uri="iso9573-13/isomopf.ent"/>

<!-- .............................................................. -->
<!--                    NON-MATHML ENTITIES(backwards compatibility)-->
<!-- .............................................................. -->

  <public publicId="-//W3C//ENTITIES Greek Letters//EN"
               uri="xmlchars/isogrk1.ent"/>

  <public publicId="-//W3C//ENTITIES Monotoniko Greek//EN"
               uri="xmlchars/isogrk2.ent"/>

  <public publicId="-//W3C//ENTITIES Alternative Greek Symbols//EN"
               uri="xmlchars/isogrk4.ent"/>

</group>

<!-- ============================================================== -->

</catalog>