README.md

An updated guide for the perplexed: cytometry in the high-dimensional era

This repository contains scripts and data to generate Figures 2D-F. The scripts here utilise the Spectre toolkit in R. See this page for installation instructions.

Briefly, Spectre can be installed via devtools. In R/RStudio:

# Install devtools
if(!require('devtools')) {install.packages('devtools')}

# Install Spectre
library('devtools')
options(timeout=6000)
devtools::install_github("immunedynamics/spectre")