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wps_percentile_indice.py
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wps_percentile_indice.py
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from pywps.Process import WPSProcess
import icclim
import icclim.util.callback as callback
import dateutil.parser
from datetime import datetime
import os
from os.path import expanduser
from mkdir_p import *
transfer_limit_Mb = 100
class ProcessPercentileIndice(WPSProcess):
def __init__(self):
WPSProcess.__init__(self,
identifier = 'wps_percentile_indice', # only mandatary attribute = same file name
title = 'PercentileIndices',
abstract = 'Computes single input, percentile based indices of temperature: TG10p, TX10p, TN10p, TG90p, TX90p, TN90p, WSDI, CSDI; and of rainfall R75p, R95p, R99p, R75TOT, R95TOT, R99TOT.',
version = "1.0",
storeSupported = True,
statusSupported = True,
grassLocation =False)
self.indiceNameIn = self.addLiteralInput(identifier = 'indiceName',
title = 'Indice name',
type="String",
default = 'TG90p')
self.indiceNameIn.values = ['TG10p', 'TX10p', 'TN10p', 'TG90p', 'TX90p', 'TN90p', 'WSDI', 'CSDI', 'R75p', 'R75TOT', 'R95p', 'R95TOT', 'R99p', 'R99TOT']
self.sliceModeIn = self.addLiteralInput(identifier = 'sliceMode',
title = 'Slice mode (temporal grouping to apply for calculations)',
type="String",
default = 'year')
self.sliceModeIn.values = ["year","month","ONDJFM","AMJJAS","DJF","MAM","JJA","SON"]
self.filesBasePeriodIn = self.addLiteralInput(identifier = 'filesBasePeriod',
title = 'Input netCDF files list (base (reference) period)',
abstract="application/netcdf",
type=type("S"),
minOccurs=0,
maxOccurs=1024,
default = 'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20060101-20251231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20260101-20501231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20510101-20751231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20760101-21001231.nc')
self.timeRangeBasePeriodIn = self.addLiteralInput(identifier = 'timeRangeBasePeriod',
title = 'Time range of base (reference) period, e.g. 1961-01-01/1990-12-31',
type="String",
default = 'Please Fill-in')
self.filesStudyPeriodIn = self.addLiteralInput(identifier = 'filesStudyPeriod',
title = 'Input netCDF files list (study period)',
abstract="application/netcdf",
type=type("S"),
minOccurs=0,
maxOccurs=1024,
default = 'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20060101-20251231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20260101-20501231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20510101-20751231.nc,' +
'http://opendap.knmi.nl/knmi/thredds/dodsC/IS-ENES/TESTSETS/tas_day_EC-EARTH_rcp26_r8i1p1_20760101-21001231.nc')
self.timeRangeStudyPeriodIn = self.addLiteralInput(identifier = 'timeRangeStudyPeriod',
title = 'Time range, e.g. 2010-01-01/2012-12-31',
type="String",
default = 'Please Fill-in')
self.varNameIn = self.addLiteralInput(identifier = 'varName',
title = 'Variable name to process',
type="String",
default = 'tas')
self.leapNonLeapYearsIn = self.addLiteralInput(identifier = 'leapNonLeapYears',
title = 'Method for computing a percentile value for the calendar day of February 29th',
type="String",
default = "take all years (leap and non-leap)")
self.leapNonLeapYearsIn.values = ["take all years (leap and non-leap)", "take only leap years"]
self.outputFileNameIn = self.addLiteralInput(identifier = 'outputFileName',
title = 'Name of output netCDF file',
type="String",
default = './out_icclim.nc')
self.NLevelIn = self.addLiteralInput(identifier = 'NLevel',
title = 'Number of level (if 4D variable)',
type="String",
default = None)
self.opendapURL = self.addLiteralOutput(identifier = "opendapURL",title = "opendapURL");
def callback(self,message,percentage):
self.status.set("%s" % str(message),str(percentage));
def execute(self):
# Very important: This allows the NetCDF library to find the users credentials (X509 cert)
homedir = os.environ['HOME']
os.chdir(homedir)
def callback(b):
self.callback("Processing",b)
indice_name = self.indiceNameIn.getValue()
in_files = []
in_files.extend(self.filesBasePeriodIn.getValue())
time_range_base_period = self.timeRangeBasePeriodIn.getValue()
var_name = self.varNameIn.getValue()
leap_nonleap_years = self.leapNonLeapYearsIn.getValue()
in_files.extend(self.filesStudyPeriodIn.getValue())
time_range_study_period = self.timeRangeStudyPeriodIn.getValue()
slice_mode = self.sliceModeIn.getValue()
out_file_name = self.outputFileNameIn.getValue()
level = self.NLevelIn.getValue()
if (level == "None"):
level = None
if (time_range_base_period == "None"):
time_range_base_period = None
else:
startdate = dateutil.parser.parse(time_range_base_period.split("/")[0])
stopdate = dateutil.parser.parse(time_range_base_period.split("/")[1])
time_range_base_period = [startdate,stopdate]
if(time_range_study_period == "None"):
time_range_study_period = None
else:
startdate = dateutil.parser.parse(time_range_study_period.split("/")[0])
stopdate = dateutil.parser.parse(time_range_study_period.split("/")[1])
time_range_study_period = [startdate,stopdate]
if (leap_nonleap_years == "take all years (leap and non-leap)"):
leap_nonleap_years = False
else:
leap_nonleap_years = True
home = expanduser("~")
self.status.set("Preparing....", 0)
pathToAppendToOutputDirectory = "/WPS_"+self.identifier+"_" + datetime.now().strftime("%Y%m%dT%H%M%SZ")
""" URL output path """
fileOutURL = os.environ['POF_OUTPUT_URL'] + pathToAppendToOutputDirectory+"/"
""" Internal output path"""
fileOutPath = os.environ['POF_OUTPUT_PATH'] + pathToAppendToOutputDirectory +"/"
""" Create output directory """
mkdir_p(fileOutPath)
self.status.set("Processing input list: " + str(in_files), 0)
icclim.indice(indice_name=indice_name,
in_files=in_files,
var_name=var_name,
slice_mode=slice_mode,
time_range=time_range_study_period,
out_file=fileOutPath+out_file_name,
N_lev=level,
transfer_limit_Mbytes=transfer_limit_Mb,
callback=callback,
callback_percentage_start_value=0,
callback_percentage_total=100,
base_period_time_range=time_range_base_period,
window_width=5,
only_leap_years=leap_nonleap_years,
ignore_Feb29th=True,
interpolation='hyndman_fan',
netcdf_version='NETCDF4_CLASSIC',
out_unit='days')
""" Set output """
url = fileOutURL+"/"+out_file_name;
self.opendapURL.setValue(url);
self.status.set("ready",100);