meta.yaml

{% set name = "phabox" %}
{% set version = "2.1.1" %}

package:
  name: "{{ name|lower }}"
  version: "{{ version }}"

source:
  #path: .
  git_url: https://github.com/KennthShang/PhaBOX.git
  git_rev: main  # or a specific commit/tag

build:
  number: 0
  noarch: python
  script: "{{ PYTHON }} -m pip install . -vv"
  entry_points:
    - phabox2=phabox2.phabox2:main

requirements:
  host:
    - python
    - setuptools
  run:
    - python =3.10.14
    - diamond =0.9.14
    - blast =2.16.0 
    - mcl =22.282
    - fasttree =2.1.11 
    - kcounter =0.1.1 
    - mafft =7.525
    - numpy =1.26.4 
    - pandas =2.2.3 
    - networkx =3.4.2 
    - seaborn-base =0.13.2 
    - biopython =1.84 
    - tqdm =4.66.5 
    - scipy =1.14.1
    - datasets
    - transformers
    - pytorch
    - triton
    - accelerate
    - prodigal-gv

test:
  commands:
    - phabox2 --help

about:
  home: https://github.com/KennthShang/PhaBOX
  license: MIT
  summary: Virus identification and analysis web server (tool set)

extra:
  recipe-maintainers:
    - SHANG Jiayu
    - PENG Cheng

channels:
  - bioconda
  - conda-forge
  - defaults

  # Add other channels as needed