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Some transforms still have OBO: prefixes for native nodes #193

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caufieldjh opened this issue Sep 26, 2022 · 0 comments
Open

Some transforms still have OBO: prefixes for native nodes #193

caufieldjh opened this issue Sep 26, 2022 · 0 comments
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@caufieldjh
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caufieldjh commented Sep 26, 2022

Describe the bug

Some OBO transforms still have OBO: prefixes before their own prefixes. For example, SCDO:

id	category	name	description	provided_by	synonym	:http://www.w3.org/2004/02/skos/core#prefLabel	accessRights	accrualMethod	accrualPeriodicity	accrualPolicy	audience	available	comment	conformsTo	coverage	creator	deprecated	has_db_xref	issued	language	license	s_c_d_o_0000303	s_c_d_o_0000340	s_c_d_o_0000363	s_c_d_o_0000468	s_c_d_o_0000470	s_c_d_o_0000472	s_c_d_o_0000479	s_c_d_o_0000481	s_c_d_o_0000482	s_c_d_o_0000484	s_c_d_o_0000486	s_c_d_o_0000661	s_c_d_o_0000662	s_c_d_o_0000929	s_c_d_o_0001033	s_c_d_o_0001222	s_c_d_o_0001335	s_c_d_o_1000176	s_c_d_o_1000288	s_c_d_o_1000517	s_c_d_o_1000518	s_c_d_o_1000519	s_c_d_o_1000735	s_c_d_o_1000736	s_c_d_o_1000737	s_c_d_o_1000739	s_c_d_o_1000740	s_c_d_o_1000741	s_c_d_o_1000742	s_c_d_o_1000743	s_c_d_o_1000744	s_c_d_o_1000748	s_c_d_o_1000749	s_c_d_o_1000910	source	summary	type
OBO:SCDO_1000498	biolink:NamedThing	Yes-No Question	A dichotomous question that has answer options "yes" and "no".	scdo8mogo7sj												SCDO (Jade Hotchkiss)																								None																		owl:Class
OBO:SCDO_1000494	biolink:NamedThing	Dichotomous Question	A close-ended question that provides two possible answers.	scdo8mogo7sj												SCDO (Jade Hotchkiss)																								None																		owl:Class
OBO:SCDO_1000122	biolink:NamedThing	Embu	The Embu are a Bantu-speaking people who are closely related to the Gikuyu of Ndia and Gicugu to the west, the Mbeere and the Kamba to the southeast, and the Chuka and the Meru to the north in Kenya.	scdo8mogo7sj	Embu Ethnic Group																	Request inclusion into relevant ontology, possibly below "Ethnic Group" in NCIT?																		Negligable																Demographic and Health Surveys Program (2015)		owl:Class

The same issue is present for but certainly not limited to:

  • In lepao, some AISM nodes

To Reproduce

python run.py --bucket kg-hub-public-data --save_local --get_only scdo

Expected behavior

Prefixes should take the form SCDO:

Version

107f982

@caufieldjh caufieldjh added the bug Something isn't working label Sep 26, 2022
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