New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Unable to restore chromosome and BP for a file #9

Open

carlostellophd opened this issue Sep 6, 2024 · 0 comments

Collaborator

carlostellophd commented Sep 6, 2024

I tried to restore Chr and BP for a file including rsid, EA, OA, beta, SE, and p-value (link to download the summary statistics: http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST009001-GCST010000/GCST009160/Wood_et_al_2013_PMID_23696881_1000G_circulating_molecules.txt.gz) but SumStatsRehab didn't work and I lost the rsid instead. A colleague fixed it by using UKBB as the reference panel instead of science shared to annotate the variant ids. The issue is recurrent for all the summary statistics from that study.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment