From bd68a6a48e7d42b0f24ab830a6c77d681e135831 Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Mon, 13 May 2024 15:11:50 +0200 Subject: [PATCH] Remove space modifs from sbwf --- subworkflows/nf-core/vcf_phase_shapeit5/main.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/subworkflows/nf-core/vcf_phase_shapeit5/main.nf b/subworkflows/nf-core/vcf_phase_shapeit5/main.nf index ef6f95b0..f25db146 100644 --- a/subworkflows/nf-core/vcf_phase_shapeit5/main.nf +++ b/subworkflows/nf-core/vcf_phase_shapeit5/main.nf @@ -1,6 +1,6 @@ -include { BEDTOOLS_MAKEWINDOWS } from '../../../modules/nf-core/bedtools/makewindows/main.nf' -include { SHAPEIT5_PHASECOMMON } from '../../../modules/nf-core/shapeit5/phasecommon/main' -include { SHAPEIT5_LIGATE } from '../../../modules/nf-core/shapeit5/ligate/main' +include { BEDTOOLS_MAKEWINDOWS } from '../../../modules/nf-core/bedtools/makewindows/main.nf' +include { SHAPEIT5_PHASECOMMON } from '../../../modules/nf-core/shapeit5/phasecommon/main' +include { SHAPEIT5_LIGATE } from '../../../modules/nf-core/shapeit5/ligate/main' include { BCFTOOLS_INDEX as VCF_BCFTOOLS_INDEX_1 } from '../../../modules/nf-core/bcftools/index/main.nf' include { BCFTOOLS_INDEX as VCF_BCFTOOLS_INDEX_2 } from '../../../modules/nf-core/bcftools/index/main.nf' @@ -90,7 +90,7 @@ workflow VCF_PHASE_SHAPEIT5 { emit: bed = BEDTOOLS_MAKEWINDOWS.out.bed // channel: [ val(meta), bed ] variants_phased = SHAPEIT5_LIGATE.out.merged_variants // channel: [ val(meta), vcf ] - variants_index = VCF_INDEX2.out.csi // channel: [ val(meta), csi ] + variants_index = VCF_BCFTOOLS_INDEX_2.out.csi // channel: [ val(meta), csi ] versions = ch_versions // channel: [ versions.yml ] }