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Tutorial: basic settings in alphabase #187

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jalew188 opened this issue Jun 25, 2024 · 1 comment
Open

Tutorial: basic settings in alphabase #187

jalew188 opened this issue Jun 25, 2024 · 1 comment
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jalew188 commented Jun 25, 2024 •
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The tutorial notebook of basic settings in alphabase:

  1. base DF structures
  2. spec libs
  3. HDF5 storage
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From @JuliaS92 : Could you maybe include a short explanation of how to configure proteases by regex? The regex are non-trivial but it's something wetlab people might want to do. Something like a template for N vs C-terminal cleavage and how to incorporate exclusion patterns would suffice.

@jalew188 jalew188 self-assigned this Jun 28, 2024
jalew188 added a commit that referenced this issue Jul 17, 2024
@jalew188
#187 update tutorial notebooks
3e6df63
jalew188 added a commit that referenced this issue Jul 17, 2024
@jalew188
#187 Merge branch 'development' into 187-tutorial-basic-settings
a62fa94
jalew188 added a commit that referenced this issue Jul 17, 2024
@jalew188
#187 fix space PTMs
77ebdf0
jalew188 added a commit that referenced this issue Jul 19, 2024
@jalew188
#187 add description for flat frag df
3e6bbac
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