From 8444b37be9b6cf14e5f7957d4f2390790b41d976 Mon Sep 17 00:00:00 2001 From: zhouxiexuan Date: Wed, 20 Dec 2023 09:14:19 +0100 Subject: [PATCH] contrib->thermo --- alphaviz/thermo/xic_plot.py | 2 +- nbs/tutorial_DIANN_alphabase.ipynb | 10 +++++++--- 2 files changed, 8 insertions(+), 4 deletions(-) diff --git a/alphaviz/thermo/xic_plot.py b/alphaviz/thermo/xic_plot.py index 44da1b6..bb56373 100644 --- a/alphaviz/thermo/xic_plot.py +++ b/alphaviz/thermo/xic_plot.py @@ -11,7 +11,7 @@ TimsTOF, ) -from alphaviz.contrib.msplot_utils import ( +from alphaviz.thermo.msplot_utils import ( _plot_line, _plot_line_fast ) diff --git a/nbs/tutorial_DIANN_alphabase.ipynb b/nbs/tutorial_DIANN_alphabase.ipynb index 966b9df..df1da8a 100644 --- a/nbs/tutorial_DIANN_alphabase.ipynb +++ b/nbs/tutorial_DIANN_alphabase.ipynb @@ -36,7 +36,7 @@ } ], "source": [ - "from alphaviz.contrib.ms_viz import MS_Viz\n", + "from alphaviz.thermo.ms_viz import MS_Viz\n", "\n", "from peptdeep.pretrained_models import ModelManager\n", "\n", @@ -353623,7 +353623,9 @@ "outputs": [ { "data": { - "image/svg+xml": "5960616200.2M0.4M0.6M0.8M1M1.2Mb2+ 235.108b3+ 398.171b4+ 455.193b5+ 602.261b6+ 731.304b7+ 859.398b8+ 956.451b4++ 228.100b6++ 366.155b7++ 430.203b8++ 478.729b9++ 522.245b11++ 614.306b12++ 678.335b13++ 742.364y9+ 1056.580y8+ 927.537y7+ 799.442y6+ 702.389y5+ 615.357y4+ 544.320y3+ 431.236y2+ 303.178y13++ 747.889y12++ 712.370y11++ 630.838y10++ 602.328y8++ 464.272y7++ 400.225y3++ 216.122_YAYGFEKPSAIQQR_,3RT (min)Intensity" + "image/svg+xml": [ + "5960616200.2M0.4M0.6M0.8M1M1.2Mb2+ 235.108b3+ 398.171b4+ 455.193b5+ 602.261b6+ 731.304b7+ 859.398b8+ 956.451b4++ 228.100b6++ 366.155b7++ 430.203b8++ 478.729b9++ 522.245b11++ 614.306b12++ 678.335b13++ 742.364y9+ 1056.580y8+ 927.537y7+ 799.442y6+ 702.389y5+ 615.357y4+ 544.320y3+ 431.236y2+ 303.178y13++ 747.889y12++ 712.370y11++ 630.838y10++ 602.328y8++ 464.272y7++ 400.225y3++ 216.122_YAYGFEKPSAIQQR_,3RT (min)Intensity" + ] }, "metadata": {}, "output_type": "display_data" @@ -353649,7 +353651,9 @@ "outputs": [ { "data": { - "image/svg+xml": "2004006008001000−1M−0.5M00.5M1M1.5M2004006008001000−505_YAYGFEKPSAIQQR_,3 PCC=0.978intensityppmb2+b3+b7+b9++y9+y8+y7+y6+y4+y2+y13++y12++y11++y8++y7++y5+y3+y10++y9++YAYGFEKPSAIQQRb2b3b7b9y13y12y11y9y8y7y6y4y2" + "image/svg+xml": [ + "2004006008001000−1M−0.5M00.5M1M1.5M2004006008001000−505_YAYGFEKPSAIQQR_,3 PCC=0.978intensityppmb2+b3+b7+b9++y9+y8+y7+y6+y4+y2+y13++y12++y11++y8++y7++y5+y3+y10++y9++YAYGFEKPSAIQQRb2b3b7b9y13y12y11y9y8y7y6y4y2" + ] }, "metadata": {}, "output_type": "display_data"