From 2fbbc9dd28c78fcd318e84bcc8debd2620a3c0ba Mon Sep 17 00:00:00 2001
From: ammarcsj <70114795+ammarcsj@users.noreply.github.com>
Date: Mon, 12 Aug 2024 17:32:50 +0200
Subject: [PATCH] fix filterdict default

---
 directlfq/cli.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/directlfq/cli.py b/directlfq/cli.py
index 461acb1..7b722f6 100644
--- a/directlfq/cli.py
+++ b/directlfq/cli.py
@@ -197,7 +197,7 @@ def gui():
 @click.option("--filename_suffix", "-fs", type=str, default="", help="A suffix to add to the output file name.")
 @click.option("--num_cores",  "-nc", type = int, default = None, help="The number of cores to use (default is to use multiprocessing).")
 @click.option("--deactivate_normalization",  "-dn", type = bool, default = False, help="If you want to deactivate the normalization step, you can set this flag to True.")
-@click.option("--filter_dict",  "-dn", type = bool, default = False, help="In case you want to define specific filters in addition to the standard filters, you can add a yaml file where the filters are defined (see GitHub docu for example).")
+@click.option("--filter_dict",  "-fd", type = str, default = None, help="In case you want to define specific filters in addition to the standard filters, you can add a yaml file where the filters are defined (see GitHub docu for example).")
 
 def run_directlfq(**kwargs):
     print("starting directLFQ")