From b98892b8c10c225090ed0944c4ce85dc3c2d13c7 Mon Sep 17 00:00:00 2001
From: ammarcsj <70114795+ammarcsj@users.noreply.github.com>
Date: Mon, 12 Aug 2024 17:33:00 +0200
Subject: [PATCH] add cli run to quicktests

---
 tests/run_quicktests.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tests/run_quicktests.sh b/tests/run_quicktests.sh
index c628186..bf7726b 100755
--- a/tests/run_quicktests.sh
+++ b/tests/run_quicktests.sh
@@ -4,5 +4,6 @@ python download_testfiles.py quicktest
 cd quicktests
 jupyter nbconvert --to script run_pipeline_w_different_input_formats.ipynb
 python run_pipeline_w_different_input_formats.py
+directlfq lfq -i ../../test_data/system_tests/quicktests/diann/shortened_input.tsv
 cd ..
 conda deactivate
\ No newline at end of file