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Interpolate 5.25to1upsampleZ.ijm
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Interpolate 5.25to1upsampleZ.ijm
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/*
* Macro template to process multiple images in a folder
*/
#@ File (label = "Input directory", style = "directory") input
#@ File (label = "Output directory", style = "directory") output
#@ String (label = "File suffix", value = ".tif") suffix
// See also Process_Folder.py for a version of this code
// in the Python scripting language.
setBatchMode("hide");
processFolder(input);
// function to scan folders/subfolders/files to find files with correct suffix
function processFolder(input) {
list = getFileList(input);
list = Array.sort(list);
for (i = 0; i < list.length; i++) {
if(File.isDirectory(input + File.separator + list[i]))
processFolder(input + File.separator + list[i]);
if(endsWith(list[i], suffix))
processFile(input, output, list[i]);
}
}
function processFile(input, output, file) {
// Do the processing here by adding your own code.
// Leave the print statements until things work, then remove them.
open(input + File.separator + file);
//print(getSliceNumber());
Stack.getDimensions(width, height, channels, slices, frames);
//print(slices);
z = floor(slices*5.25);
//print(z);
run("Size...", "width=238 height=238 depth="+z+" constrain average interpolation=Bilinear");
saveAs("TIFF", output+File.separator+file);
}