pyproject.toml

[tool.poetry]
name = "nanocompore"
version = "1.0.0rc3-2"
description = "Software package that identifies raw signal changes between two conditions from https://github.com/jts/nanopolish resquiggled dRNA-Seq data."
authors = ["Tommaso Leonardi <tom@itm6.xyz>", "Adrien Leger <aleg@ebi.ac.uk>"]
license = "GPL-3.0"
readme = "README.md"
repository = "https://github.com/tleonardi/nanocompore"
documentation = "http://nanocompore.rna.rocks"
classifiers = [
        'Development Status :: 4 - Beta',
        'Intended Audience :: Science/Research',
        'Topic :: Scientific/Engineering :: Bio-Informatics',
        'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
        'Programming Language :: Python :: 3'
]
include = ["nanocompore/models/kmers_model_RNA_r9.4_180mv.tsv"]

[tool.poetry.scripts]
nanocompore = 'nanocompore.__main__:main'


[tool.poetry.dependencies]
python = ">=3.6.1"
numpy = "^1.16"
scipy = "~1.2"
tqdm = "^4.32"
pyfaidx = "^0.5.5"
matplotlib = "^3.1"
seaborn = "^0.9.0"
pandas = "^0.24.2"
statsmodels = "^0.9.0"
scikit-learn = "^0.21.2"
bedparse = "^0.2.2"
pyyaml = "^5.1"

[tool.poetry.dev-dependencies]
pytest = "^4.6"
nbconvert = "^5.5"
mkdocs = "^1.0"
pymdown-extensions = "^6.0"
mknotebooks = "^0.1.6"
mkdocs-material = "^4.3"

[build-system]
requires = ["poetry>=0.12"]
build-backend = "poetry.masonry.api"