diff --git a/src/mykrobe/cmds/amr.py b/src/mykrobe/cmds/amr.py index 552112e..9172184 100755 --- a/src/mykrobe/cmds/amr.py +++ b/src/mykrobe/cmds/amr.py @@ -153,6 +153,7 @@ def ref_data_from_args(args): "var_to_res_json": args.custom_variant_to_resistance_json, "hierarchy_json": None, "lineage_json": args.custom_lineage_json, + "ncbi_names_json": None, "kmer": args.kmer, "version": "custom", "species_phylo_group": None,