-
Notifications
You must be signed in to change notification settings - Fork 0
/
DESCRIPTION
33 lines (33 loc) · 1.58 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
Package: ChAMP
Type: Package
Title: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Version: 2.6.3
Date: 2017-3-28
Description: The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.
Authors@R: c(person("Tian","Yuan", role = c("cre", "aut"),
email = "champ450k@gmail.com"),
person("Tiffany","Morris",role = "ctb"),
person("Lee", "Stirling", role = "ctb"),
person("Andrew", "Feber", role = "ctb"),
person("Andrew", "Teschendorff", role = "ctb"),
person("Ankur", "Chakravarthy", role = "ctb"))
License: GPL-3
VignetteBuilder: knitr
Depends: R (>= 3.3), minfi, ChAMPdata (>= 2.6.0), FEM (>= 3.1),DMRcate,
Illumina450ProbeVariants.db,IlluminaHumanMethylationEPICmanifest
Imports: sva, IlluminaHumanMethylation450kmanifest, limma,RPMM, DNAcopy, preprocessCore,impute, marray, wateRmelon,
plyr,goseq,doRNG,
GenomicRanges,RefFreeEWAS,qvalue,isva,doParallel,bumphunter,quadprog,shiny,shinythemes,plotly (>=
4.5.6),RColorBrewer,dendextend, matrixStats
biocViews: Microarray, MethylationArray, Normalization, TwoChannel, CopyNumber, DNAMethylation
Suggests: knitr,rmarkdown
Author: Yuan Tian [cre,aut],
Tiffany Morris [ctb],
Lee Stirling [ctb],
Andrew Feber [ctb],
Andrew Teschendorff [ctb],
Ankur Chakravarthy [ctb]
Maintainer: Yuan Tian <champ450k@gmail.com>
NeedsCompilation: no
LazyData: true
Packaged: 2017-03-28 15:36:47 UTC; tianyuan