Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Concept similarity subgraph retrieval #61

Open
RichardBruskiewich opened this issue May 29, 2018 · 2 comments
Open

Concept similarity subgraph retrieval #61

RichardBruskiewich opened this issue May 29, 2018 · 2 comments

Comments

@RichardBruskiewich
Copy link
Collaborator

Given two identified nodes, return any subgraph path which connects them (by diverse, user set criteria of “similarity”?). Infer what kind of similarity metric is needed (by category types).
Connected nodes by any path

  • Similar genes
  • Similar diseases
  • Similar drugs / chemical compounds
  • Geometric structure
  • Same chemical family
  • Treats same disease
  • Targets same genes or pathways
  • Similar side effect profiles
    etc…
@kennethbruskiewicz
Copy link

During the first hackathon I found that researchers used analogies prolifically (as well as generalizations which is what the hierarchical ontology is for). This would be quite helpful

@cmungall
Copy link
Member

it looks like the scope of KBA is increasing to be more like the biolink API?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@cmungall @RichardBruskiewich @kennethbruskiewicz