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Status of Polus Plugins #488

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nishaq503 opened this issue Nov 29, 2023 · 0 comments
Open

Status of Polus Plugins #488

nishaq503 opened this issue Nov 29, 2023 · 0 comments
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@sameeul @NHotaling @Nicholas-Schaub @nishaq503
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bug Something isn't working feature New feature or request

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This is a summary of the plugins on the master branch.
The following table shows a quick overview, while subsequent sections provide more details.

Summary Table

The columns are as follows:

  • Family: The group of plugins that the plugin belongs to. This refers to the (potentially nested) folder that the plugin is in.
  • Plugin: The name of the plugin.
    • I have stripped the polus- prefix from the plugin name.
    • Some plugins did not have the -plugin postfix.
  • Version: The version of the plugin.
    • If there is an open PR for the plugin, this number will reflect the version in the PR.
  • Language: The language(s) that the plugin is written in.
  • Status: The status of the plugin.
    • Updated: The plugin has been updated to the new standard for python plugins.
    • Peer Review: The plugin has been updated to the new standard for python plugins and is currently in peer review.
    • Old: The plugin has not been updated to the new standard for python plugins.
    • Unknown: The plugin is not a python plugin.
  • PR: The PR number for the plugin.
    • If there is no PR, this will be None.
  • bfio: The version of bfio that the plugin uses.
    • If the plugin does not use bfio, this will be None.
    • 1.x refers to an undetermined version of bfio before the 2.0 release.
    • 2.x refers to an undetermined version of bfio before the 2.1.9 release.
  • filepattern: The version of filepattern that the plugin uses.
    • If the plugin does not use filepattern, this will be None.
    • 1.x refers to an undetermined version of filepattern before the 2.0.0 release.
    • test-2.2.7 refers to the version of filepattern on test-pypi.
  • preadator: The version of preadator that the plugin uses.
    • If the plugin does not use preadator, this will be None.
  • nyxus: The version of nyxus that the plugin uses.
    • If the plugin does not use nyxus, this will be None.

Clustering

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
clustering k-means-clustering-plugin 0.3.2-dev Python Updated None None 2.0.0 None 0.5.0
clustering/K-NN Distributed-Memory None C++ Unknown None None None None None
clustering/K-NN Shared-Memory-GPU 0.1.0 Cuda Unknown None None None None None
clustering/K-NN Shared-Memory-OpenMP 0.1.0 C++ Unknown None None None None None
clustering/K-NN Shared-Memory-Serial 0.1.0 C++ Unknown None None None None None
clustering feature-subsetting-plugin 0.1.11 Python Old None None 1.4.5 None None
clustering hdbscan-clustering-plugin 0.4.7 Python Old None None None None None
clustering outlier-removal-plugin 0.2.5 Python Old None None None None None

Dimension Reduction

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
dimension_reduction/PCA Distributed-Memory Unknown Python Old None None None None None
dimension_reduction/PCA Shared-Memory 0.1.3 Python Old None None None None None
dimension_reduction/UMAP Shared-Memory-GPU 0.1.0 C++/Cuda Unknown None None None None None
dimension_reduction/UMAP Shared-Memory-OpenMP 0.1.6 C++ Unknown None None None None None

Features

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
features feature-segmentation-eval 0.2.3 Python Updated None None 2.0.1 None None
features nyxus-plugin 0.1.3 Python Old None None 1.4.7 0.2.0 0.4.0
features pixel-segmentation-eval 0.1.10 Python Updated None 2.1.9 2.0.1 None None
features csv-statistics-plugin 0.2.1 Python Old None None 1.4.7 None None
features feature-extraction-plugin 0.12.2 Python Old None Unknown 1.4.4 None None
features imagenet-model-featurization-plugin 0.1.3 Python Old None 2.1.9 None None None
features object-spectral-featurization-plugin 0.1.2 Python Old None 2.1.9 None None None
features region-segmentation-eval 0.2.3 Python Updated None 2.1.9 2.0.1 None None

Formats

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
formats file-renaming-plugin 0.2.0 Python Updated None None None None None
formats label-to-vector-plugin 0.7.0-dev30 Python Peer Review #450 2.1.9 2.0.1 None None
formats ome-converter-plugin 0.3.0 Python Peer Review #486 2.1.9 test-2.2.7 None None
formats czi-extract-plugin 1.1.1 Python Old None 2.x None 0.2.0 None
formats fcs-to-csv-converter-plugin 0.2.5 Python Old None None None None None
formats feather-to-tabular-plugin 0.1.2 Python Old None 2.1.9 1.4.7 None None
formats imaris-parser-plugin 0.3.3 Python Old None None None None None
formats multichannel-tiff-plugin 0.2.3 Python Old None 1.x 1.2.4 None None
formats tabular-to-feather-plugin 0.1.4 Python Old None None 1.4.7 None None
formats tiledtiff-converter-plugin 1.1.2 Java Unknown None None None None None
formats vector-to-label-plugin 0.7.0-dev34 Python Peer Review #450 2.1.9 2.0.1 None None

Regression

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
regression basic-flatfield-estimation-plugin 2.0.0 Python Updated None 2.1.9 2.0.0 None None
regression theia-bleedthrough-estimation-plugin 0.5.0-dev0 Python Peer Review #451 2.3.1-dev0 2.0.1 None None

Segmentation

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
segmentation aics-classic-seg-plugin 0.1.11 Python Old None None None None None
segmentation cell-nuclei-segmentation 0.1.4 Python Old None None None None None
segmentation imagej-threshold-apply-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-huang-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-ij1-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-intermodes-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-isodata-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-li-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-maxentropy-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-maxlikelyhood-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-mean-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-minerror-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-minimum-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-moments-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation imagej-threshold-otsu-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-percentile-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
segmentation imagej-threshold-renyientropy-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation imagej-threshold-rosin-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation imagej-threshold-shanbhag-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation imagej-threshold-triangle-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation imagej-threshold-yen-plugin 0.4.2 Python Old None Unknown 1.4.4 None None
segmentation smp-training-plugin 0.5.11 Python Old None 2.1.9 1.4.7 None None
segmentation z01-segmentation-plugin 0.2.0 Python Old None 2.x None None None

Transforms

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
transforms recycle-vector-plugin 1.5.0 Python Old None None 1.4.7 None None
transforms/images apply-flatfield-plugin 2.0.0-dev8 Python Peer Review #443 2.1.9 2.0.0 None None
transforms/images image-assembler-plugin 1.4.0-dev0 Python Peer Review #479, #481 2.1.9 2.0.4 0.4.0.dev2 None
transforms/images image-calculator-plugin 0.2.0 Python Updated None 2.1.9 1.4.7 None None
transforms/images lumos-bleedthrough-correction-plugin 0.1.0 Python Updated None 2.1.9 2.0.0 None None
transforms/images montage-plugin 0.5.0 Python Updated None 2.1.9 2.0.0 None None
transforms/images autocropping-plugin 1.0.2 Python Old None 2.1.9 1.4.7 None None
transforms/images binary-operations-plugin 0.4.2 Python Old None 1.x 1.4.7 None None
transforms/images ftl-label-plugin 0.3.10 Python/CPython/Rust Old None 2.1.9 1.4.7 None None
transforms/images image-registration-plugin 0.3.5 Python Old None 1.x 1.2.4 None None
transforms/images imagej-deconvolve-richardsonlucy-plugin 0.4.3 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-deconvolve-richardsonlucytv-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-addpoissonnoise-plugin 0.4.4 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-convolve-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-correlate-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-derivativegauss-plugin 0.4.4 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-dog-plugin 0.3.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-frangivesselness-plugin 0.4.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-gauss-plugin 0.3.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-partialderivative-plugin 0.3.5 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-sobel-plugin 0.3.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-filter-tubeness-plugin 0.3.8 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-image-integral-plugin 0.3.2 Python Old None 2.1.9 1.4.7 None None
transforms/images imagej-image-invert-plugin 0.4.0 Python Old None 2.1.9 1.4.7 None None
transforms/images intensity-projection-plugin 1.0.0 Python Old None 2.0.5 None 0.2.0 None
transforms/images rolling-ball-plugin 1.1.0-dev0 Python Peer Review #429 2.1.9 None None None
transforms/images stack-z-slice-plugin 1.2.4 Python Old None 2.x 1.4.7 0.2.0 None
transforms/images roi-relabel-plugin 0.2.2 Python Updated None 2.1.9 2.0.0 None None
transforms/tabular csv-merger-plugin 0.4.0 Python Old None None 1.4.7 None None
transforms/tabular generalized-linear-model-plugin 0.2.5 R Unknown None None None None None
transforms/tabular tabular-thresholding-plugin 0.1.3 Python Updated None None test-2.2.7 None None

Utils

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
utils filepattern-generator-plugin 0.2.1 Python Old None None 1.4.7 None None
utils csv-collection-merger 0.1.1 sh Old None None None None None
utils generic-to-image-collection-plugin 0.1.1 Python Old None 2.x 1.4.7 None None
utils imagej-macro-plugin 0.1.3 Python Old None 2.1.9 1.4.7 None None
utils notebook-plugin 0.4.0 Python Old None 2.1.9 1.4.7 None None
utils stitching-vector-merger-plugin 0.1.8 Python Old None None None None None
utils subset-data-plugin 0.1.8 Python Old None None 1.4.7 None None

Visualization

Family Plugin Version Language Status PR bfio filepattern preadator nyxus
visualization color-pyramid-builder-plugin 0.3.3 Python Updated None 1.x 1.2.4 None None
visualization feature-heatmap-pyramid-plugin 0.2.0 Python Updated None 1.x 1.2.4 None None
visualization graph-pyramid-builder-plugin 1.3.8 Python Updated None 1.x 1.2.4 None None
visualization image-cluster-annotation-plugin 0.2.4 Python Updated None 2.x 1.2.4 None None
visualization precompute-slide-plugin 1.7.0-dev0 Python Peer Review #484 2.1.9 2.0.4 0.4.0-dev2 None
visualization precompute-volume-plugin 1.7.0-dev0 Python Old None 2.1.9 1.4.7 None None
visualization tabular-to-microjson-plugin 0.1.0 Python Updated None None 2.0.1 None None

Details

Clustering

k-means-clsutering-plugin
  • Version: 0.3.2-dev
  • Language: Python
  • Status: Updated
  • bfio: None
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: 0.5.0
K-NN
Distributed-Memory
  • Version: None
  • Language: C++
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
Shared-Memory-GPU
  • Version: 0.1.0
  • Language: Cuda
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
Shared-Memory-OpenMP
  • Version: 0.1.0
  • Language: C++
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
Shared-Memory-Serial
  • Version: 0.1.0
  • Language: C++
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
feature-subsetting-plugin
  • Version: 0.1.11
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.5
  • preadator: None
  • nyxus: None
hdbscan-clustering-plugin
  • Version: 0.4.7
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
outlier-removal-plugin
  • Version: 0.2.5
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None

Dimension Reduction

PCA
Distributed-Memory
  • Version: Unknown
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
Shared-Memory
  • Version: 0.1.3
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
UMAP
Shared-Memory-GPU
  • Version: 0.1.0
  • Language: C++/Cuda
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
Shared-Memory-OpenMP
  • Version: 0.1.6
  • Language: C++
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None

Features

feature-segmentation-eval
  • Version: 0.2.3
  • Language: Python
  • Status: Updated
  • bfio: None
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None
nyxus-plugin
  • Version: 0.1.3
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: 0.2.0
  • nyxus: 0.4.0
pixel-segmentation-eval
  • Version: 0.1.10
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None
csv-statistics-plugin
  • Version: 0.2.1
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
feature-extraction-plugin
  • Version: 0.12.2
  • Language: Python
  • Status: Old
  • bfio: Unknown
  • filepattern: 1.4.4
  • preadator: None
  • nyxus: None
imagenet-model-featurization-plugin
  • Version: 0.1.3
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: None
  • preadator: None
  • nyxus: None
object-spectral-featurization-plugin
  • Version: 0.1.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: None
  • preadator: None
  • nyxus: None
region-segmentation-eval
  • Version: 0.2.3
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None

Formats

file-renaming-plugin
  • Version: 0.2.0
  • Language: Python
  • Status: Updated
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
label-to-vector-plugin
  • Version: 0.7.0-dev30
  • Language: Python
  • Status: Peer Review
  • PR: #450
  • bfio: 2.1.9
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None
ome-converter-plugin
  • Version: 0.3.0
  • Language: Python
  • Status: Peer Review
  • PR: #486
  • bfio: 2.1.9
  • filepattern: test-2.2.7
  • preadator: None
  • nyxus: None
czi-extract-plugin
  • Version: 1.1.1
  • Language: Python
  • Status: Old
  • bfio: 2.x
  • filepattern: None
  • preadator: 0.2.0
  • nyxus: None
fcs-to-csv-converter-plugin
  • Version: 0.2.5
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
feather-to-tabular-plugin
  • Version: 0.1.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imaris-parser-plugin
  • Version: 0.3.3
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
multichannel-tiff-plugin
  • Version: 0.2.3
  • Language: Python
  • Status: Old
  • bfio: 1.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
tabular-to-feather-plugin
  • Version: 0.1.4
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
tiledtiff-converter-plugin
  • Version: 1.1.2
  • Language: Java
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
vector-to-label-plugin
  • Version: 0.7.0-dev34
  • Language: Python
  • Status: Peer Review
  • PR: #450
  • bfio: 2.1.9
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None

Regression

basic-flatfield-estimation-plugin
  • Version: 2.0.0
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: None
theia-bleedthrough-estimation-plugin
  • Version: 0.5.0-dev0
  • Language: Python
  • Status: Peer Review
  • PR: #451
  • bfio: 2.3.1-dev0
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None

Segmentation

aics-classic-seg-plugin
  • Version: 0.1.11
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
cell-nuclei-segmentation
  • Version: 0.1.4
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
imagej-threshold-apply-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-huang-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-ij1-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-intermodes-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-isodata-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-li-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-maxentropy-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-maxlikelyhood-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-mean-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-minerror-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-minimum-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-moments-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-otsu-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-percentile-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-renyientropy-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-rosin-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-shanbhag-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-triangle-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-threshold-yen-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
smp-training-plugin
  • Version: 0.5.11
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
z01-segmentation-plugin
  • Version: 0.2.0
  • Language: Python
  • Status: Old
  • bfio: 2.x
  • filepattern: None
  • preadator: None
  • nyxus: None

Transforms

recycle-vector-plugin
  • Version: 1.5.0
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None

Images

apply-flatfield-plugin
  • Version: 2.0.0-dev8
  • Language: Python
  • Status: Peer Review
  • PR: #443
  • bfio: 2.1.9
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: None
image-assembler-plugin
  • Version: 1.4.0-dev0
  • Language: Python
  • Status: Peer Review
  • PR: #479, #481
  • bfio: 2.1.9
  • filepattern: 2.0.4
  • preadator: 0.4.0.dev2
  • nyxus: None
image-calculator-plugin
  • Version: 0.2.0
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
lumos-bleedthrough-correction-plugin
  • Version: 0.1.0
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: None
montage-plugin
  • Version: 0.5.0
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: None
autocropping-plugin
  • Version: 1.0.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
binary-operations-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 1.x
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
ftl-label-plugin
  • Version: 0.3.10
  • Language: Python/CPython/Rust
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
image-registration-plugin
  • Version: 0.3.5
  • Language: Python
  • Status: Old
  • bfio: 1.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
imagej-deconvolve-richardsonlucy-plugin
  • Version: 0.4.3
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-deconvolve-richardsonlucytv-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-addpoissonnoise-plugin
  • Version: 0.4.4
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-convolve-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-correlate-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-derivativegauss-plugin
  • Version: 0.4.4
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-dog-plugin
  • Version: 0.3.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-frangivesselness-plugin
  • Version: 0.4.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-gauss-plugin
  • Version: 0.3.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-partialderivative-plugin
  • Version: 0.3.5
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-sobel-plugin
  • Version: 0.3.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-filter-tubeness-plugin
  • Version: 0.3.8
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-image-integral-plugin
  • Version: 0.3.2
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-image-invert-plugin
  • Version: 0.4.0
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
intensity-projection-plugin
  • Version: 0.1.9
  • Language: Python
  • Status: Old
  • bfio: 2.0.5
  • filepattern: None
  • preadator: 0.2.0
  • nyxus: None
rolling-ball-plugin
  • Version: 1.1.0-dev0
  • Language: Python
  • Status: Peer Review
  • PR: #429
  • bfio: 2.1.9
  • filepattern: None
  • preadator: None
  • nyxus: None
stack-z-slice-plugin
  • Version: 1.2.4
  • Language: Python
  • Status: Old
  • bfio: 2.x
  • filepattern: 1.4.7
  • preadator: 0.2.0
  • nyxus: None
roi-relabel-plugin
  • Version: 0.2.2
  • Language: Python
  • Status: Updated
  • bfio: 2.1.9
  • filepattern: 2.0.0
  • preadator: None
  • nyxus: None

Tabular

csv-merger-plugin
  • Version: 0.4.0
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
generalized-linear-model-plugin
  • Version: 0.2.5
  • Language: R
  • Status: Unknown
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
tabular-thresholding-plugin
  • Version: 0.1.3
  • Language: Python
  • Status: Updated
  • bfio: None
  • filepattern: test-2.2.7
  • preadator: None
  • nyxus: None

Utils

filepattern-generator-plugin
  • Version: 0.2.1
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
csv-collection-merger
  • Version: 0.1.1
  • Language: sh
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
generic-to-image-collection-plugin
  • Version: 0.1.1
  • Language: Python
  • Status: Old
  • bfio: 2.x
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
imagej-macro-plugin
  • Version: 0.1.3
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
notebook-plugin
  • Version: 0.4.0
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
stitching-vector-merger-plugin
  • Version: 0.1.8
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: None
  • preadator: None
  • nyxus: None
subset-data-plugin
  • Version: 0.1.8
  • Language: Python
  • Status: Old
  • bfio: None
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None

Visualization

color-pyramid-builder-plugin
  • Version: 0.3.3
  • Language: Python
  • Status: Updated
  • bfio: 1.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
feature-heatmap-pyramid-plugin
  • Version: 0.2.0
  • Language: Python
  • Status: Updated
  • bfio: 1.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
graph-pyramid-builder-plugin
  • Version: 1.3.8
  • Language: Python
  • Status: Updated
  • bfio: 1.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
image-cluster-annotation-plugin
  • Version: 0.2.4
  • Language: Python
  • Status: Updated
  • bfio: 2.x
  • filepattern: 1.2.4
  • preadator: None
  • nyxus: None
precompute-slide-plugin
  • Version: 1.7.0-dev0
  • Language: Python
  • Status: Peer Review
  • PR: #484
  • bfio: 2.1.9
  • filepattern: 2.0.4
  • preadator: 0.4.0-dev2
  • nyxus: None
precompute-volume-plugin
  • Version: 1.7.0-dev0
  • Language: Python
  • Status: Old
  • bfio: 2.1.9
  • filepattern: 1.4.7
  • preadator: None
  • nyxus: None
tabular-to-microjson-plugin
  • Version: 0.1.0
  • Language: Python
  • Status: Updated
  • bfio: None
  • filepattern: 2.0.1
  • preadator: None
  • nyxus: None
@nishaq503 nishaq503 added bug Something isn't working feature New feature or request labels Nov 29, 2023
@nishaq503 nishaq503 self-assigned this Nov 29, 2023
@nishaq503 nishaq503 pinned this issue Nov 29, 2023
@nishaq503 nishaq503 mentioned this issue Nov 29, 2023
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@sameeul sameeul

@NHotaling NHotaling

@Nicholas-Schaub Nicholas-Schaub

@nishaq503 nishaq503

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@sameeul @NHotaling @Nicholas-Schaub @nishaq503