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How to get the embedding vector for cells to draw the UMAP for scGCN #13

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Jinyu2019 opened this issue May 13, 2024 · 0 comments
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@Jinyu2019
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Hi, I am learning the scGCN method, and want to draw the UMAP figure as in your article (Figure 4a). After running the 'train.py', I got serveral excel files, but how can I get the low-represented vectors for cells computed by GCN model to draw the UMAP? Thanks.

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