Dockerfile.run

# This dockerfile provides instructions for creating a docker image which we use for compiling and running
# our croco configurations in the operational system
# It has the official croco source code baked in along with the code from this repo 
FROM ubuntu:20.04

# Install dependencies
RUN export DEBIAN_FRONTEND=noninteractive && \
  apt-get update && \
  apt-get install --no-install-recommends --yes \
    wget \ 
    unzip \
    nco \
    gfortran \
    build-essential \
    mpich \
    libmpich-dev \
    make \
    libnetcdff-dev \
    libnetcdf-dev && \
  apt-get clean && apt-get autoremove

# bake in the official croco source code
RUN wget --no-check-certificate https://gitlab.inria.fr/croco-ocean/croco/-/archive/v1.3.1/croco-v1.3.1.tar.gz && \
  tar -xvzf croco-v1.3.1.tar.gz && \
  rm croco-v1.3.1.tar.gz

# bake in the code from our repo
RUN mkdir /somisana-croco
ADD . /somisana-croco

# Add "croco" user and grant sudo permission.
# RUN mkdir -p /etc/sudoers.d
# RUN adduser --shell /bin/bash --disabled-password --gecos "" croco \
#     && echo "croco ALL=(ALL) NOPASSWD: ALL" > /etc/sudoers.d/croco \
#     && chmod 0440 /etc/sudoers.d/croco

# USER croco
# WORKDIR /home/croco/

# rather setting up the user as Zach did to try and line up with how the somisana user is set up on mims, where we run the model
RUN groupadd -g 1999 runners \
  && useradd \
  -u 1003 \
  -g 1999 \
  -m \
  -s /bin/bash \
  somisana

USER somisana
WORKDIR /home/somisana