.pre-commit-config.yaml

repos:
  # Ruff mne
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.3.4
    hooks:
      - id: ruff
        name: ruff lint mne
        args: ["--fix"]
        files: ^mne/
      - id: ruff
        name: ruff lint mne preview
        args: ["--fix", "--preview", "--select=NPY201"]
        files: ^mne/
      - id: ruff
        name: ruff lint doc, tutorials, and examples
        # D103: missing docstring in public function
        # D400: docstring first line must end with period
        args: ["--ignore=D103,D400", "--fix"]
        files: ^doc/|^tutorials/|^examples/
      - id: ruff-format
        files: ^mne/|^doc/|^tutorials/|^examples/

  # Codespell
  - repo: https://github.com/codespell-project/codespell
    rev: v2.2.6
    hooks:
      - id: codespell
        additional_dependencies:
          - tomli
        files: ^mne/|^doc/|^examples/|^tutorials/
        types_or: [python, bib, rst, inc]

  # yamllint
  - repo: https://github.com/adrienverge/yamllint.git
    rev: v1.35.1
    hooks:
      - id: yamllint
        args: [--strict, -c, .yamllint.yml]

  # rstcheck
  - repo: https://github.com/rstcheck/rstcheck.git
    rev: v6.2.0
    hooks:
      - id: rstcheck
        additional_dependencies:
          - tomli
        files: ^doc/.*\.(rst|inc)$

  # mypy
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.9.0
    hooks:
      - id: mypy
        # Avoid the conflict between mne/__init__.py and mne/__init__.pyi by ignoring the former
        exclude: ^mne/(beamformer|channels|commands|datasets|decoding|export|forward|gui|html_templates|inverse_sparse|io|minimum_norm|preprocessing|report|simulation|source_space|stats|time_frequency|utils|viz)?/?__init__\.py$
        additional_dependencies: ["numpy==1.26.2"]