diff --git a/README.md b/README.md
index ba5b074..67ed199 100644
--- a/README.md
+++ b/README.md
@@ -35,7 +35,7 @@ Manuscript under preparation
|Taxonomy | Template Model | Reactions | Metabolites| Genes |
| ------------- |:-------------:|:-------------:|:-------------:|:-----:|
-|_Mus musculus_ | Human-GEM | 13093 | 8404 | 3510 |
+|_Mus musculus_ | Human-GEM | 13094 | 8404 | 3510 |
## Installation
diff --git a/model/Mouse-GEM.mat b/model/Mouse-GEM.mat
index 458a25e..162523b 100644
Binary files a/model/Mouse-GEM.mat and b/model/Mouse-GEM.mat differ
diff --git a/model/Mouse-GEM.xml b/model/Mouse-GEM.xml
index 61746fb..50b67d9 100644
--- a/model/Mouse-GEM.xml
+++ b/model/Mouse-GEM.xml
@@ -13,10 +13,10 @@
- 2020-10-24T12:15:21Z
+ 2021-01-15T15:41:00Z
- 2020-10-24T12:15:21Z
+ 2021-01-15T15:41:00Z
@@ -239191,7 +239191,7 @@
-
+
Confidence Level: 0
@@ -333113,7 +333113,7 @@
-
+
Confidence Level: 0
@@ -334649,11 +334649,24 @@
+
+
+
+ Confidence Level: 0
+
+
+
+
+
+
+
+
+
-
+
@@ -347095,6 +347108,7 @@
+
diff --git a/model/Mouse-GEM.yml b/model/Mouse-GEM.yml
index a83c995..797bcd6 100644
--- a/model/Mouse-GEM.yml
+++ b/model/Mouse-GEM.yml
@@ -3,8 +3,8 @@
- metaData:
short_name: "Mouse-GEM"
full_name: ""
- version: ""
- date: "2020-10-24"
+ version: "1.1.0"
+ date: "2021-01-15"
authors: ""
email: ""
organization: ""
@@ -194144,8 +194144,9 @@
- m03161c: -1
- temp001c: 1
- lower_bound: 0
- - upper_bound: 0
+ - upper_bound: 1000
- gene_reaction_rule: ""
+ - objective_coefficient: 1
- eccodes: ""
- references: ""
- subsystem:
@@ -270615,9 +270616,8 @@
- m10015c: -0.4835
- temp001c: 1
- lower_bound: 0
- - upper_bound: 1000
+ - upper_bound: 0
- gene_reaction_rule: ""
- - objective_coefficient: 1
- eccodes: ""
- references: ""
- subsystem:
@@ -271889,6 +271889,20 @@
- subsystem:
- "Amine sulfotransferase"
- confidence_score: 2
+ - !!omap
+ - id: "MA_20016"
+ - name: ""
+ - metabolites: !!omap
+ - m01368c: 1
+ - m01368r: -1
+ - lower_bound: 0
+ - upper_bound: 1000
+ - gene_reaction_rule: ""
+ - eccodes: ""
+ - references: ""
+ - subsystem:
+ - "Transport"
+ - confidence_score: 0
- genes:
- !!omap
- id: "A4galt"
diff --git a/model/dependencies.txt b/model/dependencies.txt
index 03d02cb..e59ef1c 100644
--- a/model/dependencies.txt
+++ b/model/dependencies.txt
@@ -1,5 +1,5 @@
MATLAB 9.8.0.1323502 (R2020a)
libSBML 5.17.0
-RAVEN_toolbox 2.4.0
+RAVEN_toolbox 2.4.2
COBRA_toolbox commit c317723
Human-GEM 1.5.0
diff --git a/version.txt b/version.txt
index 3eefcb9..9084fa2 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-1.0.0
+1.1.0