Container of computational models of metabolism for different yeast species. This repository also contains some MATLAB scripts for assessing the quality of the available models.
All available models are described here
- Models KeyWords:
GEM Category: Multi-Species; Utilisation: Predictive simulation; Field: Metabolic-network reconstruction; Type of Models: Reconstruction; Taxonomy: Ascomycota; Metabolic System: General Metabolism; Condition: Generic metabolism;
- Last update: 2020-01-27
This repository is administered by Iván Domenzain (@IVANDOMENZAIN) and Feiran Li (@feiranl), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.
- A functional Matlab installation (MATLAB 7.3 and higher).
- The RAVEN toolbox.
- The COBRA toolbox.
- The libSBML MATLAB API (version 5.13.0 is recommended).
- Gurobi Optimizer for any simulations.
- Clone the model from master branch from SysBioChalmers GitHub
- Add the directory to your Matlab path, instructions here
- Iván Domenzain, Chalmers University of Technology, Gothenburg Sweden
- Feiran Li, Chalmers University of Technology, Gothenburg Sweden