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README
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README
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THis file contains instructions ofr managing code (git, documentation, ...)
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Code Documentation
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run the following repeatedly until no errors exist ot get the code docuemntation clean
devtools::document()
To create package documentation
On Linux (sc)
1. cd to the project directory
2. run roxygen2::roxygenize(). This will create the Rd files in the man directory of the main package directory
3. on Linux, cd to the diretory above the package directory
4. run R CMD Rd2pdf <packagename>
On Windows ....
Pointing to pdflatex ...
Sys.setenv(PATH=paste(Sys.getenv("PATH"),"C:/Program Files/MiKTeX 2.9/miktex/bin/x64/",sep=";"))
Running documentation - this builds the file ToxValDB_manual.pdf
roxygen2::roxygenise()
Sys.setenv(PATH = paste(Sys.getenv("PATH"), "C:/Program Files/MiKTeX 2.9/miktex/bin/x64", sep=.Platform$path.sep))
Sys.setenv(R_PAPERSIZE="letter")
system("R CMD Rd2pdf . --title=httrpathway httrpathway --output=./httrpathway_manual.pdf --force --no-clean --internals")
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Managing git and bitbucket
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adding to the remote bitbucket ...
git config --global user.name "Richard Judson"
git config --global user.email "judson.richard@epa.gov"
cd existing-project
git init
git add --all
git commit -m "Initial Commit"
git remote add origin ssh://git@ccte-bitbucket.epa.gov:7999/httrpat/httrpathway.git
git remote set-url origin ssh://git@ccte-bitbucket.epa.gov:7999/httrpat/httrpathway.git
git push -u origin master
https://ccte-bitbucket.epa.gov/projects/HTTRPAT/repos/httrpathway/browse
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Installing other required packages
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To install tcplfit2 from git ...
devtools::install_git("http://ccte-bitbucket.epa.gov/scm/tcplFit2/tcplFit2")
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Compiling the Vignettes
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