diff --git a/benchmark/config.slurm b/benchmark/config.slurm index 0230f2d..0230a2a 100644 --- a/benchmark/config.slurm +++ b/benchmark/config.slurm @@ -10,13 +10,18 @@ module load R-geospatial + +module load gcc/11.1.0 +module load cmake/3.23.2 + export LC_ALL=C export R_LIBS_USER=/home/raina.ans/R/x86_64-pc-linux-gnu-library/4.2-geospatial + mkdir -p $R_LIBS_USER module load R/4.4.0 -Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org', version = '3.16', force = TRUE); \ +Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager', lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org'); \ BiocManager::install('MSstats', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \ BiocManager::install('MSstatsConvert', lib = Sys.getenv('R_LIBS_USER'), update = FALSE); \ install.packages(c('dplyr', 'stringr', 'ggplot2'), lib = Sys.getenv('R_LIBS_USER'), repos = 'https://cloud.r-project.org')"