diff --git a/benchmark/config.slurm b/benchmark/config.slurm index 8040f04..993b5a4 100644 --- a/benchmark/config.slurm +++ b/benchmark/config.slurm @@ -9,4 +9,10 @@ #SBATCH --partition=short # Use the 'short' partition (or change as needed) module load R +Rscript -e "if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager'); \ +BiocManager::install('MSstats', update = FALSE); \ +BiocManager::install('MSstatsConvert', update = FALSE); \ +install.packages('ggplot2', repos = 'https://cloud.r-project.org'); \ +install.packages('stringr', repos = 'https://cloud.r-project.org'); \ +install.packages('dplyr', repos = 'https://cloud.r-project.org')" Rscript benchmark.R \ No newline at end of file