DESCRIPTION

Package: MSstatsShiny
Type: Package
Title: MSstats GUI for Statistical Anaylsis of Proteomics Experiments
Version: 1.7.2
Description: MSstatsShiny is an R-Shiny graphical user interface (GUI) 
  integrated with the R packages MSstats, MSstatsTMT, and MSstatsPTM. It 
  provides a point and click end-to-end analysis pipeline applicable to a wide 
  variety of experimental designs. These include data-dependedent acquisitions (DDA)
  which are label-free or tandem mass tag (TMT)-based, as well as DIA, SRM, and 
  PRM acquisitions and those targeting post-translational modifications (PTMs). 
  The application automatically saves users selections and builds an R script 
  that recreates their analysis, supporting reproducible data analysis.
Authors@R: c(
    person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = c("aut", "cre")),
    person("Deril", "Raju", email = "raju.d@northeastern.edu", role = c("aut")),
    person("Maanasa", "Kaza", email = "maanasakaza@gmail.com", role = c("aut")),
    person("Cristina", "Pasi", email = "cristinapasi@gmail.com", role = c("aut")),
    person("Ting", "Huang", email = "thuang0703@gmail.com", role = c("aut")),
    person("Mateusz", "Staniak", email = "mateusz.staniak@math.uni.wroc.pl", role = c("aut")),
    person("Dhaval", "Mohandas", email = "dhavalmohandas@gmail.com", role = c("aut")),
    person("Eduard", "Sabido", email = "eduard.sabido@crg.cat", role = c("aut")),
    person("Meena", "Choi", email = "choi.meena@gene.com", role = c("aut")),
    person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut"))
License: Artistic-2.0
Depends: R (>= 4.2)
Imports: shiny, shinyBS, shinyjs, shinybusy, dplyr, ggplot2,plotly, data.table, Hmisc,
  MSstats, MSstatsTMT, MSstatsPTM, MSstatsConvert, gplots, marray, DT, readxl,
  ggrepel, uuid, utils, stats, htmltools, methods, tidyr, grDevices, graphics,mockery
Suggests: 
    rmarkdown,
    tinytest,
    sessioninfo,
    knitr,
    testthat (>= 3.0.0),
    shinytest2,
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, ShinyApps,
  DifferentialExpression, OneChannel, TwoChannel, Normalization, QualityControl,
  GUI
BugReports: https://github.com/Vitek-Lab/MSstatsShiny/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Config/testthat/edition: 3