runHotspot

[snguyen268]

Hi all,

I am trying to execute runHotspot on my Vision object but run into this error:

Error in py_call_impl(callable, dots$args, dots$keywords) :
TypeError: init() got an unexpected keyword argument 'latent'

Any suggestion on how I might be able to fix this? Thanks so much!

This is what I got when running traceback():
5: stop(structure(list(message = "TypeError: init() got an unexpected keyword argument 'latent'\n",
call = py_call_impl(callable, dots$args, dots$keywords),
cppstack = structure(list(file = "", line = -1L, stack = c("1 reticulate.so 0x0000000115487a6e _ZN4Rcpp9exceptionC2EPKcb + 222",
"2 reticulate.so 0x0000000115490b75 _ZN4Rcpp4stopERKNSt3__112basic_stringIcNS0_11char_traitsIcEENS0_9allocatorIcEEEE + 53",
"3 reticulate.so 0x00000001154a4787 Z12py_call_impl11PyObjectRefN4Rcpp6VectorILi19ENS0_15PreserveStorageEEES3 + 1143",
"4 reticulate.so 0x0000000115477e11 _reticulate_py_call_impl + 193",
"5 libR.dylib 0x0000000109f31292 R_doDotCall + 1458",
"6 libR.dylib 0x0000000109f7c40d bcEval + 104317",
"7 libR.dylib 0x0000000109f625e1 Rf_eval + 385",
"8 libR.dylib 0x0000000109f82459 R_execClosure + 2169",
"9 libR.dylib 0x0000000109f81247 Rf_applyClosure + 471",
"10 libR.dylib 0x0000000109f6952e bcEval + 26782",
"11 libR.dylib 0x0000000109f625e1 Rf_eval + 385",
"12 libR.dylib 0x0000000109f82459 R_execClosure + 2169",
"13 libR.dylib 0x0000000109f81247 Rf_applyClosure + 471",
"14 libR.dylib 0x0000000109f6952e bcEval + 26782",
"15 libR.dylib 0x0000000109f625e1 Rf_eval + 385",
"16 libR.dylib 0x0000000109f82459 R_execClosure + 2169",
"17 libR.dylib 0x0000000109f81247 Rf_applyClosure + 471",
"18 libR.dylib 0x0000000109f6952e bcEval + 26782",
...
4: py_call_impl(callable, dots$args, dots$keywords)
3: hotspot$Hotspot(exprData, latent = as.data.frame(object@LatentSpace),
model = model)
2: hsInit(object, model, tree, num_umi, logdata)
1: runHotspot(Tcell_vision, model = "danb",
min_gene_threshold = 10)