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npc1.old.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8" />
<title>SAVER - Single Amino acid Variant EvaluateR</title>
<link rel="stylesheet" href="css/csvtable.css" type="text/css" />
<link rel="stylesheet" href="css/headers.css" />
<style>
.hidden {
display:none;
}
.link{
font-size:"28px";
}
.link:hover{
color:"red";
}
</style>
<script type="text/javascript" src="js/jquery-1.4.2.min.js"></script>
<script type="text/javascript" src="js/jquery.tablesorter.dev.js"></script>
<script type="text/javascript" src="http://web.utk.edu/~oadebali/svg_library.js"></script>
<link rel="stylesheet" href="//code.jquery.com/ui/1.11.4/themes/smoothness/jquery-ui.css">
<script src="//code.jquery.com/jquery-1.10.2.js"></script>
<script src="//code.jquery.com/ui/1.11.4/jquery-ui.js"></script>
<script type="text/javascript" src="js/jquery.csvToTable_npc1.js"></script>
<script>
function getResult(switchButton){
$(".heads").show();
var aa0 = $("#aa0").val()
var aa1 = $("#minbeds").val()
var position = $("#amount").val()
var mutationString = aa0 + position + aa1;
if (switchButton==-1){
$(".rows").hide();
}
if (switchButton){
$("#" + mutationString).show();
}
else{
$("#" + mutationString).hide();
}
}
function openTree(){
window.open("treelign/treelign.html?f=" + $("#amount").val() + "&newick=NPC1-L1.sn.noGap.fa..phy_phyml_trec.noded.nwk.trueNPC1.distance.nwk.sorted&json=NPC1-L1.sn.TrueNPC1.fa.afa.distance.afa.json&first=gi|255652944&r=25");
}
$(function() {
var seq = "MTARGLALGLLLLLLCPAQVFSQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQPPPPPAPWTILGLDAMYVIMWITYMAFLLVFFGAFFAVWCYRKRYFVSEYTPIDSNIAFSVNASDKGEASCCDPVSAAFEGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERYKGTERERLLNF"
$( "#slider-range-max" ).slider({
range: "max",
min: 1,
max: 1278,
value: 1,
slide: function( event, ui ) {
getResult(0);
$( "#amount" ).val( ui.value );
$( "#aa0" ).val( seq[ui.value-1] );
getResult(1);
}
});
$( "#amount" ).val( $( "#slider-range-max" ).slider( "value" ) );
//$( "#aa0" ).val( $( "#slider-range-max" ).slider( "value" ) );
$( "#aa0" ).val( seq[0] );
var select = $( "#minbeds" );
var slider = $( "<div id='slider'></div>" ).insertAfter( select ).slider({
min: 1,
max: 20,
range: "min",
value: select[ 0 ].selectedIndex + 1,
slide: function( event, ui ) {
getResult(0);
select[ 0 ].selectedIndex = ui.value - 1;
getResult(1);
}
});
$( "#minbeds" ).change(function() {
getResult(-1);
slider.slider( "value", this.selectedIndex + 1 );
getResult(1);
});
//});
// $(function() {
// $.get('test.csv', function(data) {
// $('#CSVSource').html('<pre>' + data + '</pre>');
// });
$('#CSVTable').CSVToTable('S2.csv', { loadingImage: 'images/loading.gif', startLine: 0 });
// $.get('test.tsv', function(data) {
// $('#TSVSource').html('<pre>' + data + '</pre>');
// });
// $('#TSVTable').CSVToTable('test.tsv', { loadingText: 'Loading TSV Data...', loadingImage: 'images/loading.gif', startLine: 0, separator: "\t" });
// $('#CSVTable2').CSVToTable('test.csv', { loadingImage: 'images/loading.gif', startLine: 1, headers: ['Album Title', 'Artist Name', 'Price ($USD)'] }).bind("loadComplete",function() {
// $('#CSVTable2').find('TABLE').tablesorter();
// });;
});
</script>
</head>
<body>
<h2>SAVER predictions on NPC1 mutations for Niemann-Pick disease type C</h2>
<p>
<label for="amount" style="font-size:20px"><b>NPC1 protein position: </b></label>
<input type="text" id="amount" readonly style="border:0; font-size:24px; color:#000; font-weight:bold;">
<br>
<label for="aa0" style="font-size:20px"><b>Original amino-acid (AA0): </b></label>
<input type="text" id="aa0" readonly style="border:0; font-size:24px; color:#000; font-weight:bold;">
<div id="slider-range-max" style="margin-top:-30px"></div>
</p>
<p>
<form id="reservation">
<label for="minbeds" style="font-family: 'Open Sans', sans-serif;font-size:20px"><b>Replacing amino-acid (AA1): </b></label>
<select style="border:0; font-size:24px; color:#000; font-weight:bold;" name="minbeds" id="minbeds">
<option>A</option>
<option>C</option>
<option>D</option>
<option>E</option>
<option>F</option>
<option>G</option>
<option>H</option>
<option>I</option>
<option>K</option>
<option>L</option>
<option>M</option>
<option>N</option>
<option>P</option>
<option>Q</option>
<option>R</option>
<option>S</option>
<option>T</option>
<option>V</option>
<option>W</option>
<option>Y</option>
</select>
</form>
<br>
</p>
<div id="CSVTable"></div>
<div>
<br><br>
<label onclick="openTree()" class="link heads"><h3><a>View alignment</a><h3></label>
<label onclick="window.open('S2.csv')" class="link heads"><h3><a>Download Full Table</a><h3></label>
</div>
<script>$(".link").hide();</script>
<div>
<p align="right" style="margin-right:10px">
Copyright © 2015 - <a href="mailto:ogun@utk.edu">Ogun Adebali</a>
</p>
</div>
</body>
</html>