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Applicability to Bulk RNASeq #38

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robertamezquita opened this issue Apr 11, 2023 · 1 comment
Open

Applicability to Bulk RNASeq #38

robertamezquita opened this issue Apr 11, 2023 · 1 comment

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@robertamezquita
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Hi, wonderful package that is very easy to run and well documented. I'd love to get your thoughts on if you think AUCell might be applicable to running on bulk RNAseq data to get at per-sample geneset enrichment statistics, in lieu of group-centric geneset enrichment a la traditional GSEA. Thanks for your thoughts/advice!
@lucygarner
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lucygarner commented Aug 22, 2023 •
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I am also interested in the question and have posted it on Bioconductor: https://support.bioconductor.org/p/9153409

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@robertamezquita @lucygarner